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Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1)

• Premise of the study: Nuclear microsatellite (simple sequence repeat [SSR]) markers were developed for the woody species Leptospermum recurvum found on Mount Kinabalu, Borneo, to facilitate investigation of the genetic structure and patterns of gene flow in relation to leaf phenotypic polymorphism...

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Autores principales: Ando, Soichi, Kaneko, Shingo, Isagi, Yuji, Repin, Rimi, Kitayama, Kanehiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103141/
https://www.ncbi.nlm.nih.gov/pubmed/25202580
http://dx.doi.org/10.3732/apps.1200010
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author Ando, Soichi
Kaneko, Shingo
Isagi, Yuji
Repin, Rimi
Kitayama, Kanehiro
author_facet Ando, Soichi
Kaneko, Shingo
Isagi, Yuji
Repin, Rimi
Kitayama, Kanehiro
author_sort Ando, Soichi
collection PubMed
description • Premise of the study: Nuclear microsatellite (simple sequence repeat [SSR]) markers were developed for the woody species Leptospermum recurvum found on Mount Kinabalu, Borneo, to facilitate investigation of the genetic structure and patterns of gene flow in relation to leaf phenotypic polymorphisms. • Methods and Results: Eleven primer pairs were developed using the compound SSR marker technique. Ten of the 11 loci were polymorphic and their expected heterozygosity ranged from 0.04 to 0.83. Neither linkage disequilibrium nor departure from Hardy–Weinberg equilibrium were detected. All primer pairs also amplified the SSR loci of L. polygalifolium. • Conclusions: These findings suggest the utility of these primers for investigating genetic structure and gene flow in L. recurvum and indicate their applicability to another species of Leptospermum.
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spelling pubmed-41031412014-09-08 Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1) Ando, Soichi Kaneko, Shingo Isagi, Yuji Repin, Rimi Kitayama, Kanehiro Appl Plant Sci Primer Note • Premise of the study: Nuclear microsatellite (simple sequence repeat [SSR]) markers were developed for the woody species Leptospermum recurvum found on Mount Kinabalu, Borneo, to facilitate investigation of the genetic structure and patterns of gene flow in relation to leaf phenotypic polymorphisms. • Methods and Results: Eleven primer pairs were developed using the compound SSR marker technique. Ten of the 11 loci were polymorphic and their expected heterozygosity ranged from 0.04 to 0.83. Neither linkage disequilibrium nor departure from Hardy–Weinberg equilibrium were detected. All primer pairs also amplified the SSR loci of L. polygalifolium. • Conclusions: These findings suggest the utility of these primers for investigating genetic structure and gene flow in L. recurvum and indicate their applicability to another species of Leptospermum. Botanical Society of America 2013-09-02 /pmc/articles/PMC4103141/ /pubmed/25202580 http://dx.doi.org/10.3732/apps.1200010 Text en © 2013 Ando et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Ando, Soichi
Kaneko, Shingo
Isagi, Yuji
Repin, Rimi
Kitayama, Kanehiro
Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1)
title Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1)
title_full Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1)
title_fullStr Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1)
title_full_unstemmed Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1)
title_short Development of SSR markers for the tropical alpine tree species Leptospermum recurvum (Myrtaceae) on Mount Kinabalu in Borneo(1)
title_sort development of ssr markers for the tropical alpine tree species leptospermum recurvum (myrtaceae) on mount kinabalu in borneo(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103141/
https://www.ncbi.nlm.nih.gov/pubmed/25202580
http://dx.doi.org/10.3732/apps.1200010
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