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Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1)
• Premise of the study: To investigate the genetic diversity of a root crop, Xanthosoma sagittifolium, and to facilitate germplasm conservation, microsatellite loci were developed and characterized by genotyping 39 accessions from different geographic origins. • Methods and Results: Using a microsat...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103442/ https://www.ncbi.nlm.nih.gov/pubmed/25202635 http://dx.doi.org/10.3732/apps.1400027 |
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author | Cathebras, Chloe Traore, Renan Malapa, Roger Risterucci, Ange-Marie Chaïr, Hana |
author_facet | Cathebras, Chloe Traore, Renan Malapa, Roger Risterucci, Ange-Marie Chaïr, Hana |
author_sort | Cathebras, Chloe |
collection | PubMed |
description | • Premise of the study: To investigate the genetic diversity of a root crop, Xanthosoma sagittifolium, and to facilitate germplasm conservation, microsatellite loci were developed and characterized by genotyping 39 accessions from different geographic origins. • Methods and Results: Using a microsatellite-enriched library approach, 17 polymorphic microsatellite markers were identified and characterized. The number of alleles for each locus ranged from two to six. Observed and expected heterozygosities ranged from 0.00 to 0.97 and from 0.09 to 0.78, respectively. Additionally, cross-amplification of these microsatellite markers was tested successfully in other species of Xanthosoma and Caladium, with rates varying from 23.5% to 100%. • Conclusions: These results indicate the effectiveness of microsatellite loci developed for the characterization of X. sagittifolium genetic diversity. They are crucial for the future investigation of population dynamics and clonal identification and, therefore, for prioritizing germplasm conservation. They should also enable research on other related species. |
format | Online Article Text |
id | pubmed-4103442 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41034422014-09-08 Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1) Cathebras, Chloe Traore, Renan Malapa, Roger Risterucci, Ange-Marie Chaïr, Hana Appl Plant Sci Primer Note • Premise of the study: To investigate the genetic diversity of a root crop, Xanthosoma sagittifolium, and to facilitate germplasm conservation, microsatellite loci were developed and characterized by genotyping 39 accessions from different geographic origins. • Methods and Results: Using a microsatellite-enriched library approach, 17 polymorphic microsatellite markers were identified and characterized. The number of alleles for each locus ranged from two to six. Observed and expected heterozygosities ranged from 0.00 to 0.97 and from 0.09 to 0.78, respectively. Additionally, cross-amplification of these microsatellite markers was tested successfully in other species of Xanthosoma and Caladium, with rates varying from 23.5% to 100%. • Conclusions: These results indicate the effectiveness of microsatellite loci developed for the characterization of X. sagittifolium genetic diversity. They are crucial for the future investigation of population dynamics and clonal identification and, therefore, for prioritizing germplasm conservation. They should also enable research on other related species. Botanical Society of America 2014-06-04 /pmc/articles/PMC4103442/ /pubmed/25202635 http://dx.doi.org/10.3732/apps.1400027 Text en © 2014 Cathebras et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Cathebras, Chloe Traore, Renan Malapa, Roger Risterucci, Ange-Marie Chaïr, Hana Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1) |
title | Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1) |
title_full | Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1) |
title_fullStr | Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1) |
title_full_unstemmed | Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1) |
title_short | Characterization of microsatellites in Xanthosoma sagittifolium (Araceae) and cross-amplification in related species(1) |
title_sort | characterization of microsatellites in xanthosoma sagittifolium (araceae) and cross-amplification in related species(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103442/ https://www.ncbi.nlm.nih.gov/pubmed/25202635 http://dx.doi.org/10.3732/apps.1400027 |
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