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cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1)

• Premise of the study: A lack of genetic markers impedes our understanding of the population biology of Lemna minor. Thus, the development of appropriate genetic markers for L. minor promises to be highly useful for population genetic studies and for addressing other life history questions regardin...

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Detalles Bibliográficos
Autores principales: Wani, Gowher A., Shah, Manzoor A., Reshi, Zafar A., Atangana, Alain R., Khasa, Damase P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103473/
https://www.ncbi.nlm.nih.gov/pubmed/25202636
http://dx.doi.org/10.3732/apps.1300099
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author Wani, Gowher A.
Shah, Manzoor A.
Reshi, Zafar A.
Atangana, Alain R.
Khasa, Damase P.
author_facet Wani, Gowher A.
Shah, Manzoor A.
Reshi, Zafar A.
Atangana, Alain R.
Khasa, Damase P.
author_sort Wani, Gowher A.
collection PubMed
description • Premise of the study: A lack of genetic markers impedes our understanding of the population biology of Lemna minor. Thus, the development of appropriate genetic markers for L. minor promises to be highly useful for population genetic studies and for addressing other life history questions regarding the species. • Methods and Results: For the first time, we characterized nine polymorphic and 24 monomorphic chloroplast microsatellite markers in L. minor using DNA samples of 26 individuals sampled from five populations in Kashmir and of 17 individuals from three populations in Quebec. Initially, we designed 33 primer pairs, which were tested on genomic DNA from natural populations. Nine loci provided markers with two alleles. Based on genotyping of the chloroplast DNA fragments from 43 sampled individuals, we identified one haplotype in Quebec and 11 haplotypes in Kashmir, of which one occurs in 56% of the genotypes, one in 8%, and nine in 4%, respectively. There was a maximum of two alleles per locus. • Conclusions: These new chloroplast microsatellite markers for L. minor and haplotype distribution patterns indicate a complex phylogeographic history that merits further investigation.
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spelling pubmed-41034732014-09-08 cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1) Wani, Gowher A. Shah, Manzoor A. Reshi, Zafar A. Atangana, Alain R. Khasa, Damase P. Appl Plant Sci Primer Note • Premise of the study: A lack of genetic markers impedes our understanding of the population biology of Lemna minor. Thus, the development of appropriate genetic markers for L. minor promises to be highly useful for population genetic studies and for addressing other life history questions regarding the species. • Methods and Results: For the first time, we characterized nine polymorphic and 24 monomorphic chloroplast microsatellite markers in L. minor using DNA samples of 26 individuals sampled from five populations in Kashmir and of 17 individuals from three populations in Quebec. Initially, we designed 33 primer pairs, which were tested on genomic DNA from natural populations. Nine loci provided markers with two alleles. Based on genotyping of the chloroplast DNA fragments from 43 sampled individuals, we identified one haplotype in Quebec and 11 haplotypes in Kashmir, of which one occurs in 56% of the genotypes, one in 8%, and nine in 4%, respectively. There was a maximum of two alleles per locus. • Conclusions: These new chloroplast microsatellite markers for L. minor and haplotype distribution patterns indicate a complex phylogeographic history that merits further investigation. Botanical Society of America 2014-07-02 /pmc/articles/PMC4103473/ /pubmed/25202636 http://dx.doi.org/10.3732/apps.1300099 Text en © 2014 Wani et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Wani, Gowher A.
Shah, Manzoor A.
Reshi, Zafar A.
Atangana, Alain R.
Khasa, Damase P.
cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1)
title cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1)
title_full cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1)
title_fullStr cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1)
title_full_unstemmed cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1)
title_short cpDNA microsatellite markers for Lemna minor (Araceae): Phylogeographic implications(1)
title_sort cpdna microsatellite markers for lemna minor (araceae): phylogeographic implications(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103473/
https://www.ncbi.nlm.nih.gov/pubmed/25202636
http://dx.doi.org/10.3732/apps.1300099
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