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Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)

• Premise of the study: Measurement of leaf areas from digital photographs has traditionally required significant user input unless backgrounds are carefully masked. Easy Leaf Area was developed to batch process hundreds of Arabidopsis rosette images in minutes, removing background artifacts and sav...

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Detalles Bibliográficos
Autores principales: Easlon, Hsien Ming, Bloom, Arnold J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103476/
https://www.ncbi.nlm.nih.gov/pubmed/25202639
http://dx.doi.org/10.3732/apps.1400033
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author Easlon, Hsien Ming
Bloom, Arnold J.
author_facet Easlon, Hsien Ming
Bloom, Arnold J.
author_sort Easlon, Hsien Ming
collection PubMed
description • Premise of the study: Measurement of leaf areas from digital photographs has traditionally required significant user input unless backgrounds are carefully masked. Easy Leaf Area was developed to batch process hundreds of Arabidopsis rosette images in minutes, removing background artifacts and saving results to a spreadsheet-ready CSV file. • Methods and Results: Easy Leaf Area uses the color ratios of each pixel to distinguish leaves and calibration areas from their background and compares leaf pixel counts to a red calibration area to eliminate the need for camera distance calculations or manual ruler scale measurement that other software methods typically require. Leaf areas estimated by this software from images taken with a camera phone were more accurate than ImageJ estimates from flatbed scanner images. • Conclusions: Easy Leaf Area provides an easy-to-use method for rapid measurement of leaf area and nondestructive estimation of canopy area from digital images.
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spelling pubmed-41034762014-09-08 Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) Easlon, Hsien Ming Bloom, Arnold J. Appl Plant Sci Software Note • Premise of the study: Measurement of leaf areas from digital photographs has traditionally required significant user input unless backgrounds are carefully masked. Easy Leaf Area was developed to batch process hundreds of Arabidopsis rosette images in minutes, removing background artifacts and saving results to a spreadsheet-ready CSV file. • Methods and Results: Easy Leaf Area uses the color ratios of each pixel to distinguish leaves and calibration areas from their background and compares leaf pixel counts to a red calibration area to eliminate the need for camera distance calculations or manual ruler scale measurement that other software methods typically require. Leaf areas estimated by this software from images taken with a camera phone were more accurate than ImageJ estimates from flatbed scanner images. • Conclusions: Easy Leaf Area provides an easy-to-use method for rapid measurement of leaf area and nondestructive estimation of canopy area from digital images. Botanical Society of America 2014-07-09 /pmc/articles/PMC4103476/ /pubmed/25202639 http://dx.doi.org/10.3732/apps.1400033 Text en © 2014 Easlon and Bloom. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Software Note
Easlon, Hsien Ming
Bloom, Arnold J.
Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)
title Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)
title_full Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)
title_fullStr Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)
title_full_unstemmed Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)
title_short Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)
title_sort easy leaf area: automated digital image analysis for rapid and accurate measurement of leaf area(1)
topic Software Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103476/
https://www.ncbi.nlm.nih.gov/pubmed/25202639
http://dx.doi.org/10.3732/apps.1400033
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