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Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1)
• Premise of the study: Measurement of leaf areas from digital photographs has traditionally required significant user input unless backgrounds are carefully masked. Easy Leaf Area was developed to batch process hundreds of Arabidopsis rosette images in minutes, removing background artifacts and sav...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103476/ https://www.ncbi.nlm.nih.gov/pubmed/25202639 http://dx.doi.org/10.3732/apps.1400033 |
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author | Easlon, Hsien Ming Bloom, Arnold J. |
author_facet | Easlon, Hsien Ming Bloom, Arnold J. |
author_sort | Easlon, Hsien Ming |
collection | PubMed |
description | • Premise of the study: Measurement of leaf areas from digital photographs has traditionally required significant user input unless backgrounds are carefully masked. Easy Leaf Area was developed to batch process hundreds of Arabidopsis rosette images in minutes, removing background artifacts and saving results to a spreadsheet-ready CSV file. • Methods and Results: Easy Leaf Area uses the color ratios of each pixel to distinguish leaves and calibration areas from their background and compares leaf pixel counts to a red calibration area to eliminate the need for camera distance calculations or manual ruler scale measurement that other software methods typically require. Leaf areas estimated by this software from images taken with a camera phone were more accurate than ImageJ estimates from flatbed scanner images. • Conclusions: Easy Leaf Area provides an easy-to-use method for rapid measurement of leaf area and nondestructive estimation of canopy area from digital images. |
format | Online Article Text |
id | pubmed-4103476 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41034762014-09-08 Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) Easlon, Hsien Ming Bloom, Arnold J. Appl Plant Sci Software Note • Premise of the study: Measurement of leaf areas from digital photographs has traditionally required significant user input unless backgrounds are carefully masked. Easy Leaf Area was developed to batch process hundreds of Arabidopsis rosette images in minutes, removing background artifacts and saving results to a spreadsheet-ready CSV file. • Methods and Results: Easy Leaf Area uses the color ratios of each pixel to distinguish leaves and calibration areas from their background and compares leaf pixel counts to a red calibration area to eliminate the need for camera distance calculations or manual ruler scale measurement that other software methods typically require. Leaf areas estimated by this software from images taken with a camera phone were more accurate than ImageJ estimates from flatbed scanner images. • Conclusions: Easy Leaf Area provides an easy-to-use method for rapid measurement of leaf area and nondestructive estimation of canopy area from digital images. Botanical Society of America 2014-07-09 /pmc/articles/PMC4103476/ /pubmed/25202639 http://dx.doi.org/10.3732/apps.1400033 Text en © 2014 Easlon and Bloom. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Software Note Easlon, Hsien Ming Bloom, Arnold J. Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) |
title | Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) |
title_full | Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) |
title_fullStr | Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) |
title_full_unstemmed | Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) |
title_short | Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area(1) |
title_sort | easy leaf area: automated digital image analysis for rapid and accurate measurement of leaf area(1) |
topic | Software Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103476/ https://www.ncbi.nlm.nih.gov/pubmed/25202639 http://dx.doi.org/10.3732/apps.1400033 |
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