Cargando…
Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)
• Premise of the study: We developed simple sequence repeat (SSR) markers from expressed sequence tags (ESTs) for the Solidago virgaurea complex, an ecologically and morphologically diverse species complex in the Japanese archipelago, to elucidate population genetic structure and examine taxonomic b...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103478/ https://www.ncbi.nlm.nih.gov/pubmed/25202641 http://dx.doi.org/10.3732/apps.1400035 |
_version_ | 1782327151621570560 |
---|---|
author | Sakaguchi, Shota Ito, Motomi |
author_facet | Sakaguchi, Shota Ito, Motomi |
author_sort | Sakaguchi, Shota |
collection | PubMed |
description | • Premise of the study: We developed simple sequence repeat (SSR) markers from expressed sequence tags (ESTs) for the Solidago virgaurea complex, an ecologically and morphologically diverse species complex in the Japanese archipelago, to elucidate population genetic structure and examine taxonomic boundaries. • Methods and Results: Utilizing the RNA sequencing data obtained by next-generation sequencing techniques, 15 polymorphic EST-SSR markers with three to 14 alleles were developed, most of which were transferable to different Solidago species native to Eurasia and North America. • Conclusions: The EST-SSR markers developed in this study may be useful for elucidating the population structure and taxonomic delimitation of the species complex, as well as for investigating the population genetics and reproductive ecology of Solidago species. |
format | Online Article Text |
id | pubmed-4103478 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41034782014-09-08 Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) Sakaguchi, Shota Ito, Motomi Appl Plant Sci Primer Note • Premise of the study: We developed simple sequence repeat (SSR) markers from expressed sequence tags (ESTs) for the Solidago virgaurea complex, an ecologically and morphologically diverse species complex in the Japanese archipelago, to elucidate population genetic structure and examine taxonomic boundaries. • Methods and Results: Utilizing the RNA sequencing data obtained by next-generation sequencing techniques, 15 polymorphic EST-SSR markers with three to 14 alleles were developed, most of which were transferable to different Solidago species native to Eurasia and North America. • Conclusions: The EST-SSR markers developed in this study may be useful for elucidating the population structure and taxonomic delimitation of the species complex, as well as for investigating the population genetics and reproductive ecology of Solidago species. Botanical Society of America 2014-07-02 /pmc/articles/PMC4103478/ /pubmed/25202641 http://dx.doi.org/10.3732/apps.1400035 Text en © 2014 Sakaguchi and Ito. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Sakaguchi, Shota Ito, Motomi Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) |
title | Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) |
title_full | Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) |
title_fullStr | Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) |
title_full_unstemmed | Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) |
title_short | Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) |
title_sort | development and characterization of est-ssr markers for the solidago virgaurea complex (asteraceae) in the japanese archipelago(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103478/ https://www.ncbi.nlm.nih.gov/pubmed/25202641 http://dx.doi.org/10.3732/apps.1400035 |
work_keys_str_mv | AT sakaguchishota developmentandcharacterizationofestssrmarkersforthesolidagovirgaureacomplexasteraceaeinthejapanesearchipelago1 AT itomotomi developmentandcharacterizationofestssrmarkersforthesolidagovirgaureacomplexasteraceaeinthejapanesearchipelago1 |