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Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)

• Premise of the study: We developed simple sequence repeat (SSR) markers from expressed sequence tags (ESTs) for the Solidago virgaurea complex, an ecologically and morphologically diverse species complex in the Japanese archipelago, to elucidate population genetic structure and examine taxonomic b...

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Detalles Bibliográficos
Autores principales: Sakaguchi, Shota, Ito, Motomi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103478/
https://www.ncbi.nlm.nih.gov/pubmed/25202641
http://dx.doi.org/10.3732/apps.1400035
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author Sakaguchi, Shota
Ito, Motomi
author_facet Sakaguchi, Shota
Ito, Motomi
author_sort Sakaguchi, Shota
collection PubMed
description • Premise of the study: We developed simple sequence repeat (SSR) markers from expressed sequence tags (ESTs) for the Solidago virgaurea complex, an ecologically and morphologically diverse species complex in the Japanese archipelago, to elucidate population genetic structure and examine taxonomic boundaries. • Methods and Results: Utilizing the RNA sequencing data obtained by next-generation sequencing techniques, 15 polymorphic EST-SSR markers with three to 14 alleles were developed, most of which were transferable to different Solidago species native to Eurasia and North America. • Conclusions: The EST-SSR markers developed in this study may be useful for elucidating the population structure and taxonomic delimitation of the species complex, as well as for investigating the population genetics and reproductive ecology of Solidago species.
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spelling pubmed-41034782014-09-08 Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1) Sakaguchi, Shota Ito, Motomi Appl Plant Sci Primer Note • Premise of the study: We developed simple sequence repeat (SSR) markers from expressed sequence tags (ESTs) for the Solidago virgaurea complex, an ecologically and morphologically diverse species complex in the Japanese archipelago, to elucidate population genetic structure and examine taxonomic boundaries. • Methods and Results: Utilizing the RNA sequencing data obtained by next-generation sequencing techniques, 15 polymorphic EST-SSR markers with three to 14 alleles were developed, most of which were transferable to different Solidago species native to Eurasia and North America. • Conclusions: The EST-SSR markers developed in this study may be useful for elucidating the population structure and taxonomic delimitation of the species complex, as well as for investigating the population genetics and reproductive ecology of Solidago species. Botanical Society of America 2014-07-02 /pmc/articles/PMC4103478/ /pubmed/25202641 http://dx.doi.org/10.3732/apps.1400035 Text en © 2014 Sakaguchi and Ito. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Sakaguchi, Shota
Ito, Motomi
Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)
title Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)
title_full Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)
title_fullStr Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)
title_full_unstemmed Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)
title_short Development and characterization of EST-SSR markers for the Solidago virgaurea complex (Asteraceae) in the Japanese archipelago(1)
title_sort development and characterization of est-ssr markers for the solidago virgaurea complex (asteraceae) in the japanese archipelago(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103478/
https://www.ncbi.nlm.nih.gov/pubmed/25202641
http://dx.doi.org/10.3732/apps.1400035
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