PPI layouts: BioJS components for the display of Protein-Protein Interactions

Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for thir...

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Detalles Bibliográficos
Autores principales: Salazar, Gustavo A., Meintjes, Ayton, Mulder, Nicola
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2014
Materias:
Web Tool
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103490/
https://www.ncbi.nlm.nih.gov/pubmed/25075288
http://dx.doi.org/10.12688/f1000research.3-50.v1
Descripción
Sumario:Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for third-party plugins. We provide examples of interaction networks and how the components can be used to visualize them, and refer to a more complex tool that uses these components. Availability: http://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7753

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