PPI layouts: BioJS components for the display of Protein-Protein Interactions

Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for thir...

Descripción completa

Detalles Bibliográficos
Autores principales: Salazar, Gustavo A., Meintjes, Ayton, Mulder, Nicola
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2014
Materias:
Web Tool
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103490/
https://www.ncbi.nlm.nih.gov/pubmed/25075288
http://dx.doi.org/10.12688/f1000research.3-50.v1
_version_ 1782327154367791104
author Salazar, Gustavo A.
Meintjes, Ayton
Mulder, Nicola
author_facet Salazar, Gustavo A.
Meintjes, Ayton
Mulder, Nicola
author_sort Salazar, Gustavo A.
collection PubMed
description Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for third-party plugins. We provide examples of interaction networks and how the components can be used to visualize them, and refer to a more complex tool that uses these components. Availability: http://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7753
format Online
Article
Text
id pubmed-4103490
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher F1000Research
record_format MEDLINE/PubMed
spelling pubmed-41034902014-07-28 PPI layouts: BioJS components for the display of Protein-Protein Interactions Salazar, Gustavo A. Meintjes, Ayton Mulder, Nicola F1000Res Web Tool Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for third-party plugins. We provide examples of interaction networks and how the components can be used to visualize them, and refer to a more complex tool that uses these components. Availability: http://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7753 F1000Research 2014-02-13 /pmc/articles/PMC4103490/ /pubmed/25075288 http://dx.doi.org/10.12688/f1000research.3-50.v1 Text en Copyright: © 2014 Salazar GA et al. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/publicdomain/zero/1.0/ Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
spellingShingle Web Tool
Salazar, Gustavo A.
Meintjes, Ayton
Mulder, Nicola
PPI layouts: BioJS components for the display of Protein-Protein Interactions
title PPI layouts: BioJS components for the display of Protein-Protein Interactions
title_full PPI layouts: BioJS components for the display of Protein-Protein Interactions
title_fullStr PPI layouts: BioJS components for the display of Protein-Protein Interactions
title_full_unstemmed PPI layouts: BioJS components for the display of Protein-Protein Interactions
title_short PPI layouts: BioJS components for the display of Protein-Protein Interactions
title_sort ppi layouts: biojs components for the display of protein-protein interactions
topic Web Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103490/
https://www.ncbi.nlm.nih.gov/pubmed/25075288
http://dx.doi.org/10.12688/f1000research.3-50.v1
work_keys_str_mv AT salazargustavoa ppilayoutsbiojscomponentsforthedisplayofproteinproteininteractions
AT meintjesayton ppilayoutsbiojscomponentsforthedisplayofproteinproteininteractions
AT muldernicola ppilayoutsbiojscomponentsforthedisplayofproteinproteininteractions

Ejemplares similares