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An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet
The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5–77.2%),...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103529/ https://www.ncbi.nlm.nih.gov/pubmed/24789987 http://dx.doi.org/10.1264/jsme2.ME13182 |
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author | Okazaki, Kazuyuki Iino, Takao Kuroda, Yosuke Taguchi, Kazunori Takahashi, Hiroyuki Ohwada, Takuji Tsurumaru, Hiroto Okubo, Takashi Minamisawa, Kiwamu Ikeda, Seishi |
author_facet | Okazaki, Kazuyuki Iino, Takao Kuroda, Yosuke Taguchi, Kazunori Takahashi, Hiroyuki Ohwada, Takuji Tsurumaru, Hiroto Okubo, Takashi Minamisawa, Kiwamu Ikeda, Seishi |
author_sort | Okazaki, Kazuyuki |
collection | PubMed |
description | The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5–77.2%), followed by Actinobacteria (9.8–16.6%) and Bacteroidetes (4.3– 15.4%). Alphaproteobacteria (46.7–64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia were also isolated. Phylogenetic analysis revealed that the Verrucomicrobia bacterial strains were closely related to Haloferula or Verrucomicrobium. |
format | Online Article Text |
id | pubmed-4103529 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-41035292014-07-24 An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet Okazaki, Kazuyuki Iino, Takao Kuroda, Yosuke Taguchi, Kazunori Takahashi, Hiroyuki Ohwada, Takuji Tsurumaru, Hiroto Okubo, Takashi Minamisawa, Kiwamu Ikeda, Seishi Microbes Environ Short Communication The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5–77.2%), followed by Actinobacteria (9.8–16.6%) and Bacteroidetes (4.3– 15.4%). Alphaproteobacteria (46.7–64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia were also isolated. Phylogenetic analysis revealed that the Verrucomicrobia bacterial strains were closely related to Haloferula or Verrucomicrobium. Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology 2014-06 2014-04-30 /pmc/articles/PMC4103529/ /pubmed/24789987 http://dx.doi.org/10.1264/jsme2.ME13182 Text en Copyright 2014 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Communication Okazaki, Kazuyuki Iino, Takao Kuroda, Yosuke Taguchi, Kazunori Takahashi, Hiroyuki Ohwada, Takuji Tsurumaru, Hiroto Okubo, Takashi Minamisawa, Kiwamu Ikeda, Seishi An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet |
title | An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet |
title_full | An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet |
title_fullStr | An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet |
title_full_unstemmed | An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet |
title_short | An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet |
title_sort | assessment of the diversity of culturable bacteria from main root of sugar beet |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103529/ https://www.ncbi.nlm.nih.gov/pubmed/24789987 http://dx.doi.org/10.1264/jsme2.ME13182 |
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