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An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet

The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5–77.2%),...

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Autores principales: Okazaki, Kazuyuki, Iino, Takao, Kuroda, Yosuke, Taguchi, Kazunori, Takahashi, Hiroyuki, Ohwada, Takuji, Tsurumaru, Hiroto, Okubo, Takashi, Minamisawa, Kiwamu, Ikeda, Seishi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103529/
https://www.ncbi.nlm.nih.gov/pubmed/24789987
http://dx.doi.org/10.1264/jsme2.ME13182
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author Okazaki, Kazuyuki
Iino, Takao
Kuroda, Yosuke
Taguchi, Kazunori
Takahashi, Hiroyuki
Ohwada, Takuji
Tsurumaru, Hiroto
Okubo, Takashi
Minamisawa, Kiwamu
Ikeda, Seishi
author_facet Okazaki, Kazuyuki
Iino, Takao
Kuroda, Yosuke
Taguchi, Kazunori
Takahashi, Hiroyuki
Ohwada, Takuji
Tsurumaru, Hiroto
Okubo, Takashi
Minamisawa, Kiwamu
Ikeda, Seishi
author_sort Okazaki, Kazuyuki
collection PubMed
description The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5–77.2%), followed by Actinobacteria (9.8–16.6%) and Bacteroidetes (4.3– 15.4%). Alphaproteobacteria (46.7–64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia were also isolated. Phylogenetic analysis revealed that the Verrucomicrobia bacterial strains were closely related to Haloferula or Verrucomicrobium.
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spelling pubmed-41035292014-07-24 An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet Okazaki, Kazuyuki Iino, Takao Kuroda, Yosuke Taguchi, Kazunori Takahashi, Hiroyuki Ohwada, Takuji Tsurumaru, Hiroto Okubo, Takashi Minamisawa, Kiwamu Ikeda, Seishi Microbes Environ Short Communication The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5–77.2%), followed by Actinobacteria (9.8–16.6%) and Bacteroidetes (4.3– 15.4%). Alphaproteobacteria (46.7–64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia were also isolated. Phylogenetic analysis revealed that the Verrucomicrobia bacterial strains were closely related to Haloferula or Verrucomicrobium. Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology 2014-06 2014-04-30 /pmc/articles/PMC4103529/ /pubmed/24789987 http://dx.doi.org/10.1264/jsme2.ME13182 Text en Copyright 2014 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Communication
Okazaki, Kazuyuki
Iino, Takao
Kuroda, Yosuke
Taguchi, Kazunori
Takahashi, Hiroyuki
Ohwada, Takuji
Tsurumaru, Hiroto
Okubo, Takashi
Minamisawa, Kiwamu
Ikeda, Seishi
An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet
title An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet
title_full An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet
title_fullStr An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet
title_full_unstemmed An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet
title_short An Assessment of the Diversity of Culturable Bacteria from Main Root of Sugar Beet
title_sort assessment of the diversity of culturable bacteria from main root of sugar beet
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103529/
https://www.ncbi.nlm.nih.gov/pubmed/24789987
http://dx.doi.org/10.1264/jsme2.ME13182
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