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N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere

A model system developed to produce N(2)O emissions from degrading soybean nodules in the laboratory was used to clarify the mechanism of N(2)O emission from soybean fields. Soybean plants inoculated with nosZ-defective strains of Bradyrhizobium japonicum USDA110 (ΔnosZ, lacking N(2)O reductase) wer...

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Autores principales: Inaba, Shoko, Ikenishi, Fumio, Itakura, Manabu, Kikuchi, Masakazu, Eda, Shima, Chiba, Naohiko, Katsuyama, Chie, Suwa, Yuichi, Mitsui, Hisayuki, Minamisawa, Kiwamu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103556/
https://www.ncbi.nlm.nih.gov/pubmed/23047151
http://dx.doi.org/10.1264/jsme2.ME12100
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author Inaba, Shoko
Ikenishi, Fumio
Itakura, Manabu
Kikuchi, Masakazu
Eda, Shima
Chiba, Naohiko
Katsuyama, Chie
Suwa, Yuichi
Mitsui, Hisayuki
Minamisawa, Kiwamu
author_facet Inaba, Shoko
Ikenishi, Fumio
Itakura, Manabu
Kikuchi, Masakazu
Eda, Shima
Chiba, Naohiko
Katsuyama, Chie
Suwa, Yuichi
Mitsui, Hisayuki
Minamisawa, Kiwamu
author_sort Inaba, Shoko
collection PubMed
description A model system developed to produce N(2)O emissions from degrading soybean nodules in the laboratory was used to clarify the mechanism of N(2)O emission from soybean fields. Soybean plants inoculated with nosZ-defective strains of Bradyrhizobium japonicum USDA110 (ΔnosZ, lacking N(2)O reductase) were grown in aseptic jars. After 30 days, shoot decapitation (D, to promote nodule degradation), soil addition (S, to supply soil microbes), or both (DS) were applied. N(2)O was emitted only with DS treatment. Thus, both soil microbes and nodule degradation are required for the emission of N(2)O from the soybean rhizosphere. The N(2)O flux peaked 15 days after DS treatment. Nitrate addition markedly enhanced N(2)O emission. A (15)N tracer experiment indicated that N(2)O was derived from N fixed in the nodules. To evaluate the contribution of bradyrhizobia, N(2)O emission was compared between a nirK mutant (ΔnirKΔnosZ, lacking nitrite reductase) and ΔnosZ. The N(2)O flux from the ΔnirKΔnosZ rhizosphere was significantly lower than that from ΔnosZ, but was still 40% to 60% of that of ΔnosZ, suggesting that N(2)O emission is due to both B. japonicum and other soil microorganisms. Only nosZ-competent B. japonicum (nosZ+ strain) could take up N(2)O. Therefore, during nodule degradation, both B. japonicum and other soil microorganisms release N(2)O from nodule N via their denitrification processes (N(2)O source), whereas nosZ-competent B. japonicum exclusively takes up N(2)O (N(2)O sink). Net N(2)O flux from soybean rhizosphere is likely determined by the balance of N(2)O source and sink.
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spelling pubmed-41035562014-07-24 N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere Inaba, Shoko Ikenishi, Fumio Itakura, Manabu Kikuchi, Masakazu Eda, Shima Chiba, Naohiko Katsuyama, Chie Suwa, Yuichi Mitsui, Hisayuki Minamisawa, Kiwamu Microbes Environ Articles A model system developed to produce N(2)O emissions from degrading soybean nodules in the laboratory was used to clarify the mechanism of N(2)O emission from soybean fields. Soybean plants inoculated with nosZ-defective strains of Bradyrhizobium japonicum USDA110 (ΔnosZ, lacking N(2)O reductase) were grown in aseptic jars. After 30 days, shoot decapitation (D, to promote nodule degradation), soil addition (S, to supply soil microbes), or both (DS) were applied. N(2)O was emitted only with DS treatment. Thus, both soil microbes and nodule degradation are required for the emission of N(2)O from the soybean rhizosphere. The N(2)O flux peaked 15 days after DS treatment. Nitrate addition markedly enhanced N(2)O emission. A (15)N tracer experiment indicated that N(2)O was derived from N fixed in the nodules. To evaluate the contribution of bradyrhizobia, N(2)O emission was compared between a nirK mutant (ΔnirKΔnosZ, lacking nitrite reductase) and ΔnosZ. The N(2)O flux from the ΔnirKΔnosZ rhizosphere was significantly lower than that from ΔnosZ, but was still 40% to 60% of that of ΔnosZ, suggesting that N(2)O emission is due to both B. japonicum and other soil microorganisms. Only nosZ-competent B. japonicum (nosZ+ strain) could take up N(2)O. Therefore, during nodule degradation, both B. japonicum and other soil microorganisms release N(2)O from nodule N via their denitrification processes (N(2)O source), whereas nosZ-competent B. japonicum exclusively takes up N(2)O (N(2)O sink). Net N(2)O flux from soybean rhizosphere is likely determined by the balance of N(2)O source and sink. Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology 2012-12 2012-10-05 /pmc/articles/PMC4103556/ /pubmed/23047151 http://dx.doi.org/10.1264/jsme2.ME12100 Text en Copyright © 2012 by the Japanese Society of Microbial Ecology / the Japanese Society of Soil Microbiology http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Inaba, Shoko
Ikenishi, Fumio
Itakura, Manabu
Kikuchi, Masakazu
Eda, Shima
Chiba, Naohiko
Katsuyama, Chie
Suwa, Yuichi
Mitsui, Hisayuki
Minamisawa, Kiwamu
N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere
title N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere
title_full N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere
title_fullStr N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere
title_full_unstemmed N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere
title_short N(2)O Emission from Degraded Soybean Nodules Depends on Denitrification by Bradyrhizobium japonicum and Other Microbes in the Rhizosphere
title_sort n(2)o emission from degraded soybean nodules depends on denitrification by bradyrhizobium japonicum and other microbes in the rhizosphere
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103556/
https://www.ncbi.nlm.nih.gov/pubmed/23047151
http://dx.doi.org/10.1264/jsme2.ME12100
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