Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities

The distribution of ammonia-oxidizing archaea (AOA) and bacteria (AOB) in cattle, swine, and chicken manure compost was analyzed. PCR-denaturing gradient gel electrophoresis (DGGE) showed that a Candidatus Nitrososphaera gargensis-like sequence dominated in cattle manure compost, while few AOA were...

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Detalles Bibliográficos
Autores principales: Yamamoto, Nozomi, Oishi, Ryu, Suyama, Yoshihisa, Tada, Chika, Nakai, Yutaka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology 2012
Materias:
Short Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103565/
https://www.ncbi.nlm.nih.gov/pubmed/22972386
http://dx.doi.org/10.1264/jsme2.ME12053
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author Yamamoto, Nozomi
Oishi, Ryu
Suyama, Yoshihisa
Tada, Chika
Nakai, Yutaka
author_facet Yamamoto, Nozomi
Oishi, Ryu
Suyama, Yoshihisa
Tada, Chika
Nakai, Yutaka
author_sort Yamamoto, Nozomi
collection PubMed
description The distribution of ammonia-oxidizing archaea (AOA) and bacteria (AOB) in cattle, swine, and chicken manure compost was analyzed. PCR-denaturing gradient gel electrophoresis (DGGE) showed that a Candidatus Nitrososphaera gargensis-like sequence dominated in cattle manure compost, while few AOA were detected in other composts. In the case of AOB, Nitrosomonas-like sequences were detected with higher diversity in cattle and swine manure composts. The relative abundance of ammonia oxidizers by real-time PCR revealed that more AOB was present in compost except in one swine manure compost. Our results indicated that AOB rather than AOA are widely distributed in animal manure compost.
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spelling pubmed-41035652014-07-24 Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities Yamamoto, Nozomi Oishi, Ryu Suyama, Yoshihisa Tada, Chika Nakai, Yutaka Microbes Environ Short Communication The distribution of ammonia-oxidizing archaea (AOA) and bacteria (AOB) in cattle, swine, and chicken manure compost was analyzed. PCR-denaturing gradient gel electrophoresis (DGGE) showed that a Candidatus Nitrososphaera gargensis-like sequence dominated in cattle manure compost, while few AOA were detected in other composts. In the case of AOB, Nitrosomonas-like sequences were detected with higher diversity in cattle and swine manure composts. The relative abundance of ammonia oxidizers by real-time PCR revealed that more AOB was present in compost except in one swine manure compost. Our results indicated that AOB rather than AOA are widely distributed in animal manure compost. Japanese Society of Microbial Ecology/The Japanese Society of Soil Microbiology 2012-12 2012-09-05 /pmc/articles/PMC4103565/ /pubmed/22972386 http://dx.doi.org/10.1264/jsme2.ME12053 Text en Copyright © 2012 by the Japanese Society of Microbial Ecology / the Japanese Society of Soil Microbiology http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Communication
Yamamoto, Nozomi
Oishi, Ryu
Suyama, Yoshihisa
Tada, Chika
Nakai, Yutaka
Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities
title Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities
title_full Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities
title_fullStr Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities
title_full_unstemmed Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities
title_short Ammonia-Oxidizing Bacteria Rather than Ammonia-Oxidizing Archaea were Widely Distributed in Animal Manure Composts from Field-Scale Facilities
title_sort ammonia-oxidizing bacteria rather than ammonia-oxidizing archaea were widely distributed in animal manure composts from field-scale facilities
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103565/
https://www.ncbi.nlm.nih.gov/pubmed/22972386
http://dx.doi.org/10.1264/jsme2.ME12053
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