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Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)

• Premise of the study: A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next-generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae). • Methods and Results: A total of 38 high-quality simple sequence repeat (SSR) primers were...

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Detalles Bibliográficos
Autores principales: Liu, Bing-Bing, Tian, Bin, Ma, Hui, Lu, Zhi-Qiang, Qiu, Qiang, Mao, Kang-Shan, Liu, Jian-Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103604/
https://www.ncbi.nlm.nih.gov/pubmed/25202600
http://dx.doi.org/10.3732/apps.1300062
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author Liu, Bing-Bing
Tian, Bin
Ma, Hui
Lu, Zhi-Qiang
Qiu, Qiang
Mao, Kang-Shan
Liu, Jian-Quan
author_facet Liu, Bing-Bing
Tian, Bin
Ma, Hui
Lu, Zhi-Qiang
Qiu, Qiang
Mao, Kang-Shan
Liu, Jian-Quan
author_sort Liu, Bing-Bing
collection PubMed
description • Premise of the study: A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next-generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae). • Methods and Results: A total of 38 high-quality simple sequence repeat (SSR) primers were identified, of which 15 could be successfully amplified. Subsequently, we selected 80 individuals to represent the three species of the genus to evaluate the efficacy of these markers for examining genetic diversity of each species in the future. We found that the number of alleles per locus ranged from one to nine, with an average of 3.8. The expected heterozygosity and observed heterozygosity per locus varied from 0 to 0.829 and from 0 to 1, respectively, with their respective mean values as 0.483 and 0.416. • Conclusions: These EST-SSR markers will be useful for evaluating the range-wide genetic diversity of each species and examining genetic divergence and gene flow between the three species.
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spelling pubmed-41036042014-09-08 Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) Liu, Bing-Bing Tian, Bin Ma, Hui Lu, Zhi-Qiang Qiu, Qiang Mao, Kang-Shan Liu, Jian-Quan Appl Plant Sci Primer Note • Premise of the study: A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next-generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae). • Methods and Results: A total of 38 high-quality simple sequence repeat (SSR) primers were identified, of which 15 could be successfully amplified. Subsequently, we selected 80 individuals to represent the three species of the genus to evaluate the efficacy of these markers for examining genetic diversity of each species in the future. We found that the number of alleles per locus ranged from one to nine, with an average of 3.8. The expected heterozygosity and observed heterozygosity per locus varied from 0 to 0.829 and from 0 to 1, respectively, with their respective mean values as 0.483 and 0.416. • Conclusions: These EST-SSR markers will be useful for evaluating the range-wide genetic diversity of each species and examining genetic divergence and gene flow between the three species. Botanical Society of America 2014-02-01 /pmc/articles/PMC4103604/ /pubmed/25202600 http://dx.doi.org/10.3732/apps.1300062 Text en © 2014 Liu et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Liu, Bing-Bing
Tian, Bin
Ma, Hui
Lu, Zhi-Qiang
Qiu, Qiang
Mao, Kang-Shan
Liu, Jian-Quan
Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
title Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
title_full Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
title_fullStr Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
title_full_unstemmed Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
title_short Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
title_sort development and characterization of est-ssr markers in ostryopsis (betulaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103604/
https://www.ncbi.nlm.nih.gov/pubmed/25202600
http://dx.doi.org/10.3732/apps.1300062
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