Cargando…
Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
• Premise of the study: A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next-generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae). • Methods and Results: A total of 38 high-quality simple sequence repeat (SSR) primers were...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103604/ https://www.ncbi.nlm.nih.gov/pubmed/25202600 http://dx.doi.org/10.3732/apps.1300062 |
_version_ | 1782327174328483840 |
---|---|
author | Liu, Bing-Bing Tian, Bin Ma, Hui Lu, Zhi-Qiang Qiu, Qiang Mao, Kang-Shan Liu, Jian-Quan |
author_facet | Liu, Bing-Bing Tian, Bin Ma, Hui Lu, Zhi-Qiang Qiu, Qiang Mao, Kang-Shan Liu, Jian-Quan |
author_sort | Liu, Bing-Bing |
collection | PubMed |
description | • Premise of the study: A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next-generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae). • Methods and Results: A total of 38 high-quality simple sequence repeat (SSR) primers were identified, of which 15 could be successfully amplified. Subsequently, we selected 80 individuals to represent the three species of the genus to evaluate the efficacy of these markers for examining genetic diversity of each species in the future. We found that the number of alleles per locus ranged from one to nine, with an average of 3.8. The expected heterozygosity and observed heterozygosity per locus varied from 0 to 0.829 and from 0 to 1, respectively, with their respective mean values as 0.483 and 0.416. • Conclusions: These EST-SSR markers will be useful for evaluating the range-wide genetic diversity of each species and examining genetic divergence and gene flow between the three species. |
format | Online Article Text |
id | pubmed-4103604 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41036042014-09-08 Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) Liu, Bing-Bing Tian, Bin Ma, Hui Lu, Zhi-Qiang Qiu, Qiang Mao, Kang-Shan Liu, Jian-Quan Appl Plant Sci Primer Note • Premise of the study: A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next-generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae). • Methods and Results: A total of 38 high-quality simple sequence repeat (SSR) primers were identified, of which 15 could be successfully amplified. Subsequently, we selected 80 individuals to represent the three species of the genus to evaluate the efficacy of these markers for examining genetic diversity of each species in the future. We found that the number of alleles per locus ranged from one to nine, with an average of 3.8. The expected heterozygosity and observed heterozygosity per locus varied from 0 to 0.829 and from 0 to 1, respectively, with their respective mean values as 0.483 and 0.416. • Conclusions: These EST-SSR markers will be useful for evaluating the range-wide genetic diversity of each species and examining genetic divergence and gene flow between the three species. Botanical Society of America 2014-02-01 /pmc/articles/PMC4103604/ /pubmed/25202600 http://dx.doi.org/10.3732/apps.1300062 Text en © 2014 Liu et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Liu, Bing-Bing Tian, Bin Ma, Hui Lu, Zhi-Qiang Qiu, Qiang Mao, Kang-Shan Liu, Jian-Quan Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) |
title | Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) |
title_full | Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) |
title_fullStr | Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) |
title_full_unstemmed | Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) |
title_short | Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1) |
title_sort | development and characterization of est-ssr markers in ostryopsis (betulaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103604/ https://www.ncbi.nlm.nih.gov/pubmed/25202600 http://dx.doi.org/10.3732/apps.1300062 |
work_keys_str_mv | AT liubingbing developmentandcharacterizationofestssrmarkersinostryopsisbetulaceae1 AT tianbin developmentandcharacterizationofestssrmarkersinostryopsisbetulaceae1 AT mahui developmentandcharacterizationofestssrmarkersinostryopsisbetulaceae1 AT luzhiqiang developmentandcharacterizationofestssrmarkersinostryopsisbetulaceae1 AT qiuqiang developmentandcharacterizationofestssrmarkersinostryopsisbetulaceae1 AT maokangshan developmentandcharacterizationofestssrmarkersinostryopsisbetulaceae1 AT liujianquan developmentandcharacterizationofestssrmarkersinostryopsisbetulaceae1 |