Cargando…

Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1)

• Premise of the study: Diuris basaltica (Orchidaceae) is an endangered forb on the Victorian grasslands and has many close relatives. Microsatellite markers have been developed to facilitate assessment of population structure within D. basaltica and among related taxa within the species complex. •...

Descripción completa

Detalles Bibliográficos
Autores principales: Ahrens, Collin W., James, Elizabeth A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4104714/
https://www.ncbi.nlm.nih.gov/pubmed/25202591
http://dx.doi.org/10.3732/apps.1300069
_version_ 1782327281944887296
author Ahrens, Collin W.
James, Elizabeth A.
author_facet Ahrens, Collin W.
James, Elizabeth A.
author_sort Ahrens, Collin W.
collection PubMed
description • Premise of the study: Diuris basaltica (Orchidaceae) is an endangered forb on the Victorian grasslands and has many close relatives. Microsatellite markers have been developed to facilitate assessment of population structure within D. basaltica and among related taxa within the species complex. • Methods and Results: Twenty-five microsatellite markers (13 polymorphic and 12 monomorphic) were developed from D. basaltica using 454 pyrosequencing, and all primer pairs were amplified in D. gregaria and D. chryseopsis. For the set of polymorphic markers, the number of alleles per locus ranged from one to 10, two to nine, and two to 18 for D. basaltica, D. gregaria, and D. chryseopsis, respectively. The expected and observed heterozygosities ranged from 0.18 to 0.95 and 0.14 to 0.86, respectively. • Conclusions: The microsatellite markers developed in this study can be used to analyze the population genetic structure of D. basaltica and other Diuris species.
format Online
Article
Text
id pubmed-4104714
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-41047142014-09-08 Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1) Ahrens, Collin W. James, Elizabeth A. Appl Plant Sci Primer Note • Premise of the study: Diuris basaltica (Orchidaceae) is an endangered forb on the Victorian grasslands and has many close relatives. Microsatellite markers have been developed to facilitate assessment of population structure within D. basaltica and among related taxa within the species complex. • Methods and Results: Twenty-five microsatellite markers (13 polymorphic and 12 monomorphic) were developed from D. basaltica using 454 pyrosequencing, and all primer pairs were amplified in D. gregaria and D. chryseopsis. For the set of polymorphic markers, the number of alleles per locus ranged from one to 10, two to nine, and two to 18 for D. basaltica, D. gregaria, and D. chryseopsis, respectively. The expected and observed heterozygosities ranged from 0.18 to 0.95 and 0.14 to 0.86, respectively. • Conclusions: The microsatellite markers developed in this study can be used to analyze the population genetic structure of D. basaltica and other Diuris species. Botanical Society of America 2014-01-07 /pmc/articles/PMC4104714/ /pubmed/25202591 http://dx.doi.org/10.3732/apps.1300069 Text en © 2014 Ahrens and James. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Ahrens, Collin W.
James, Elizabeth A.
Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1)
title Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1)
title_full Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1)
title_fullStr Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1)
title_full_unstemmed Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1)
title_short Characterization of 13 microsatellite markers for Diuris basaltica (Orchidaceae) and related species(1)
title_sort characterization of 13 microsatellite markers for diuris basaltica (orchidaceae) and related species(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4104714/
https://www.ncbi.nlm.nih.gov/pubmed/25202591
http://dx.doi.org/10.3732/apps.1300069
work_keys_str_mv AT ahrenscollinw characterizationof13microsatellitemarkersfordiurisbasalticaorchidaceaeandrelatedspecies1
AT jameselizabetha characterizationof13microsatellitemarkersfordiurisbasalticaorchidaceaeandrelatedspecies1