Cargando…
Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1)
• Premise of the study: The first microsatellite primers were developed for Callerya speciosa, an important traditional medicinal plant with island-mainland distributions in China, to further investigate its genetic variability and population structure. • Methods and Results: The microsatellite-cont...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105024/ https://www.ncbi.nlm.nih.gov/pubmed/25202551 http://dx.doi.org/10.3732/apps.1200345 |
_version_ | 1782327302026166272 |
---|---|
author | Li, Li Li, Zhiying Li, Kelie Huang, Bilan Xu, Li |
author_facet | Li, Li Li, Zhiying Li, Kelie Huang, Bilan Xu, Li |
author_sort | Li, Li |
collection | PubMed |
description | • Premise of the study: The first microsatellite primers were developed for Callerya speciosa, an important traditional medicinal plant with island-mainland distributions in China, to further investigate its genetic variability and population structure. • Methods and Results: The microsatellite-containing sequences were selected from a cDNA library of C. speciosa. In total, 58 primer pairs were designed, and 25 of the corresponding loci showed clear amplification. Polymorphisms were assessed in two different natural populations. The mean number of alleles per locus ranged from two to nine. Observed and expected heterozygosity per loci ranged from 0.067 to 0.938 and 0.064 to 0.836, respectively. One out of 25 loci showed departure from Hardy–Weinberg equilibrium expectations in both populations, and three pairs of loci showed significant linkage disequilibrium after Bonferroni correction. • Conclusions: These microsatellite markers will be useful tools for genetic and conservation studies and to understand the evolutionary processes in Callerya species. |
format | Online Article Text |
id | pubmed-4105024 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41050242014-09-08 Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1) Li, Li Li, Zhiying Li, Kelie Huang, Bilan Xu, Li Appl Plant Sci Primer Note • Premise of the study: The first microsatellite primers were developed for Callerya speciosa, an important traditional medicinal plant with island-mainland distributions in China, to further investigate its genetic variability and population structure. • Methods and Results: The microsatellite-containing sequences were selected from a cDNA library of C. speciosa. In total, 58 primer pairs were designed, and 25 of the corresponding loci showed clear amplification. Polymorphisms were assessed in two different natural populations. The mean number of alleles per locus ranged from two to nine. Observed and expected heterozygosity per loci ranged from 0.067 to 0.938 and 0.064 to 0.836, respectively. One out of 25 loci showed departure from Hardy–Weinberg equilibrium expectations in both populations, and three pairs of loci showed significant linkage disequilibrium after Bonferroni correction. • Conclusions: These microsatellite markers will be useful tools for genetic and conservation studies and to understand the evolutionary processes in Callerya species. Botanical Society of America 2013-05-07 /pmc/articles/PMC4105024/ /pubmed/25202551 http://dx.doi.org/10.3732/apps.1200345 Text en © 2013 Botanical Society of America |
spellingShingle | Primer Note Li, Li Li, Zhiying Li, Kelie Huang, Bilan Xu, Li Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1) |
title | Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1) |
title_full | Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1) |
title_fullStr | Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1) |
title_full_unstemmed | Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1) |
title_short | Development and characterization of EST-SSR markers in the Chinese medicinal plant Callerya speciosa (Fabaceae)(1) |
title_sort | development and characterization of est-ssr markers in the chinese medicinal plant callerya speciosa (fabaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105024/ https://www.ncbi.nlm.nih.gov/pubmed/25202551 http://dx.doi.org/10.3732/apps.1200345 |
work_keys_str_mv | AT lili developmentandcharacterizationofestssrmarkersinthechinesemedicinalplantcalleryaspeciosafabaceae1 AT lizhiying developmentandcharacterizationofestssrmarkersinthechinesemedicinalplantcalleryaspeciosafabaceae1 AT likelie developmentandcharacterizationofestssrmarkersinthechinesemedicinalplantcalleryaspeciosafabaceae1 AT huangbilan developmentandcharacterizationofestssrmarkersinthechinesemedicinalplantcalleryaspeciosafabaceae1 AT xuli developmentandcharacterizationofestssrmarkersinthechinesemedicinalplantcalleryaspeciosafabaceae1 |