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Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1)

• Premise of the study: Microsatellite markers were developed to assess polymorphism and level of genetic diversity in four Mexican populations of the neotropical vine Dalechampia scandens (Euphorbiaceae). • Methods and Results: Thirty-seven microsatellite markers representing bi-, tri-, tetra-, and...

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Autores principales: Falahati-Anbaran, Mohsen, Stenøien, Hans K., Pélabon, Christophe, Bolstad, Geir H., Perez-Barrales, Rocio, Hansen, Thomas F., Armbruster, W. Scott
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105026/
https://www.ncbi.nlm.nih.gov/pubmed/25202553
http://dx.doi.org/10.3732/apps.1200492
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author Falahati-Anbaran, Mohsen
Stenøien, Hans K.
Pélabon, Christophe
Bolstad, Geir H.
Perez-Barrales, Rocio
Hansen, Thomas F.
Armbruster, W. Scott
author_facet Falahati-Anbaran, Mohsen
Stenøien, Hans K.
Pélabon, Christophe
Bolstad, Geir H.
Perez-Barrales, Rocio
Hansen, Thomas F.
Armbruster, W. Scott
author_sort Falahati-Anbaran, Mohsen
collection PubMed
description • Premise of the study: Microsatellite markers were developed to assess polymorphism and level of genetic diversity in four Mexican populations of the neotropical vine Dalechampia scandens (Euphorbiaceae). • Methods and Results: Thirty-seven microsatellite markers representing bi-, tri-, tetra-, and pentanucleotide microsatellite repeats were developed. In total, 166 alleles were identified across 54 individuals. The number of alleles varied from one to 11 with an average of 4.49 alleles per locus. All loci except one were highly polymorphic between populations, whereas considerably less variation was detected within populations for most loci. The average observed and expected heterozygosities across study populations ranged from 0 to 0.63 and 0 to 0.59, respectively, for individual loci, and a deviation from Hardy–Weinberg equilibrium was observed for most loci. • Conclusions: The developed markers may be useful for studying genetic structure, parentage analysis, mapping, phylogeography, and cross-amplification in other closely related species of Dalechampia.
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spelling pubmed-41050262014-09-08 Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1) Falahati-Anbaran, Mohsen Stenøien, Hans K. Pélabon, Christophe Bolstad, Geir H. Perez-Barrales, Rocio Hansen, Thomas F. Armbruster, W. Scott Appl Plant Sci Primer Note • Premise of the study: Microsatellite markers were developed to assess polymorphism and level of genetic diversity in four Mexican populations of the neotropical vine Dalechampia scandens (Euphorbiaceae). • Methods and Results: Thirty-seven microsatellite markers representing bi-, tri-, tetra-, and pentanucleotide microsatellite repeats were developed. In total, 166 alleles were identified across 54 individuals. The number of alleles varied from one to 11 with an average of 4.49 alleles per locus. All loci except one were highly polymorphic between populations, whereas considerably less variation was detected within populations for most loci. The average observed and expected heterozygosities across study populations ranged from 0 to 0.63 and 0 to 0.59, respectively, for individual loci, and a deviation from Hardy–Weinberg equilibrium was observed for most loci. • Conclusions: The developed markers may be useful for studying genetic structure, parentage analysis, mapping, phylogeography, and cross-amplification in other closely related species of Dalechampia. Botanical Society of America 2013-05-07 /pmc/articles/PMC4105026/ /pubmed/25202553 http://dx.doi.org/10.3732/apps.1200492 Text en © 2013 Botanical Society of America
spellingShingle Primer Note
Falahati-Anbaran, Mohsen
Stenøien, Hans K.
Pélabon, Christophe
Bolstad, Geir H.
Perez-Barrales, Rocio
Hansen, Thomas F.
Armbruster, W. Scott
Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1)
title Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1)
title_full Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1)
title_fullStr Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1)
title_full_unstemmed Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1)
title_short Development of microsatellite markers for the neotropical vine Dalechampia scandens (Euphorbiaceae)(1)
title_sort development of microsatellite markers for the neotropical vine dalechampia scandens (euphorbiaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105026/
https://www.ncbi.nlm.nih.gov/pubmed/25202553
http://dx.doi.org/10.3732/apps.1200492
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