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Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1)
• Premise of the study: Microsatellite primers were developed in the neotropical tree species Cariniana legalis (Lecythidaceae) to investigate its genetic diversity, mating system, and gene flow. • Methods and Results: We identified 96 clones containing 82 repeat motifs from a genomic library enrich...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105027/ https://www.ncbi.nlm.nih.gov/pubmed/25202554 http://dx.doi.org/10.3732/apps.1200493 |
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author | Tambarussi, Evandro Vagner Sebbenn, Alexandre Magno Moreno, Maria Andréia Ferraz, Elza Martins Kageyama, Paulo Yoshio Vencovsky, Roland |
author_facet | Tambarussi, Evandro Vagner Sebbenn, Alexandre Magno Moreno, Maria Andréia Ferraz, Elza Martins Kageyama, Paulo Yoshio Vencovsky, Roland |
author_sort | Tambarussi, Evandro Vagner |
collection | PubMed |
description | • Premise of the study: Microsatellite primers were developed in the neotropical tree species Cariniana legalis (Lecythidaceae) to investigate its genetic diversity, mating system, and gene flow. • Methods and Results: We identified 96 clones containing 82 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer pairs were developed for 13 microsatellite loci and validated in 51 C. legalis specimens and 26 C. estrellensis specimens. Eleven loci were polymorphic, revealing a maximum of two to 15 alleles per locus in C. legalis and three to 12 in C. estrellensis. For C. legalis, the observed (H(o)) and expected (H(e)) heterozygosities ranged from 0 to 0.99 and from 0.07 to 0.90, respectively. For C. estrellensis, H(o) and H(e) ranged from 0 to 0.96 and from 0.14 to 0.91, respectively. • Conclusions: The primers identified polymorphic loci that are suitable to study genetic diversity and structure, mating system, and gene flow in C. legalis and the related species C. estrellensis. |
format | Online Article Text |
id | pubmed-4105027 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41050272014-09-08 Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1) Tambarussi, Evandro Vagner Sebbenn, Alexandre Magno Moreno, Maria Andréia Ferraz, Elza Martins Kageyama, Paulo Yoshio Vencovsky, Roland Appl Plant Sci Primer Note • Premise of the study: Microsatellite primers were developed in the neotropical tree species Cariniana legalis (Lecythidaceae) to investigate its genetic diversity, mating system, and gene flow. • Methods and Results: We identified 96 clones containing 82 repeat motifs from a genomic library enriched for (CT)(8) and (GT)(8) motifs. Primer pairs were developed for 13 microsatellite loci and validated in 51 C. legalis specimens and 26 C. estrellensis specimens. Eleven loci were polymorphic, revealing a maximum of two to 15 alleles per locus in C. legalis and three to 12 in C. estrellensis. For C. legalis, the observed (H(o)) and expected (H(e)) heterozygosities ranged from 0 to 0.99 and from 0.07 to 0.90, respectively. For C. estrellensis, H(o) and H(e) ranged from 0 to 0.96 and from 0.14 to 0.91, respectively. • Conclusions: The primers identified polymorphic loci that are suitable to study genetic diversity and structure, mating system, and gene flow in C. legalis and the related species C. estrellensis. Botanical Society of America 2013-05-07 /pmc/articles/PMC4105027/ /pubmed/25202554 http://dx.doi.org/10.3732/apps.1200493 Text en © 2013 Botanical Society of America |
spellingShingle | Primer Note Tambarussi, Evandro Vagner Sebbenn, Alexandre Magno Moreno, Maria Andréia Ferraz, Elza Martins Kageyama, Paulo Yoshio Vencovsky, Roland Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1) |
title | Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1) |
title_full | Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1) |
title_fullStr | Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1) |
title_full_unstemmed | Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1) |
title_short | Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to C. estrellensis(1) |
title_sort | microsatellite markers for cariniana legalis (lecythidaceae) and their transferability to c. estrellensis(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105027/ https://www.ncbi.nlm.nih.gov/pubmed/25202554 http://dx.doi.org/10.3732/apps.1200493 |
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