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A new R package, exsic, to assist taxonomists in creating indices(1)

• Premise of the study: Taxonomists manage large amounts of specimen data. This is usually initiated in spreadsheets and then converted for publication into locality lists and indices to associate collectors and collector numbers from herbarium sheets to identifications (exsiccatae). This conversion...

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Detalles Bibliográficos
Autores principales: Simon, Reinhard, Spooner, David M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105032/
https://www.ncbi.nlm.nih.gov/pubmed/25202559
http://dx.doi.org/10.3732/apps.1300024
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author Simon, Reinhard
Spooner, David M.
author_facet Simon, Reinhard
Spooner, David M.
author_sort Simon, Reinhard
collection PubMed
description • Premise of the study: Taxonomists manage large amounts of specimen data. This is usually initiated in spreadsheets and then converted for publication into locality lists and indices to associate collectors and collector numbers from herbarium sheets to identifications (exsiccatae). This conversion process is mostly done by hand and is time-consuming, cumbersome, and error-prone. • Methods and Results: We constructed a tool, ‘exsic,’ based on the statistical software R. The exsic function is part of the R package ‘exsic’ and produces specimen citations and exsiccatae conforming to four related formats. • Conclusions: The tool increases speed, efficiency, and accuracy to convert raw spreadsheet tables to publication-ready content.
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spelling pubmed-41050322014-09-08 A new R package, exsic, to assist taxonomists in creating indices(1) Simon, Reinhard Spooner, David M. Appl Plant Sci Software Note • Premise of the study: Taxonomists manage large amounts of specimen data. This is usually initiated in spreadsheets and then converted for publication into locality lists and indices to associate collectors and collector numbers from herbarium sheets to identifications (exsiccatae). This conversion process is mostly done by hand and is time-consuming, cumbersome, and error-prone. • Methods and Results: We constructed a tool, ‘exsic,’ based on the statistical software R. The exsic function is part of the R package ‘exsic’ and produces specimen citations and exsiccatae conforming to four related formats. • Conclusions: The tool increases speed, efficiency, and accuracy to convert raw spreadsheet tables to publication-ready content. Botanical Society of America 2013-06-07 /pmc/articles/PMC4105032/ /pubmed/25202559 http://dx.doi.org/10.3732/apps.1300024 Text en © 2013 Simon and Spooner. Published by the Botanical Society of America This article is a U.S. Government work and is in the public domain in the USA.
spellingShingle Software Note
Simon, Reinhard
Spooner, David M.
A new R package, exsic, to assist taxonomists in creating indices(1)
title A new R package, exsic, to assist taxonomists in creating indices(1)
title_full A new R package, exsic, to assist taxonomists in creating indices(1)
title_fullStr A new R package, exsic, to assist taxonomists in creating indices(1)
title_full_unstemmed A new R package, exsic, to assist taxonomists in creating indices(1)
title_short A new R package, exsic, to assist taxonomists in creating indices(1)
title_sort new r package, exsic, to assist taxonomists in creating indices(1)
topic Software Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105032/
https://www.ncbi.nlm.nih.gov/pubmed/25202559
http://dx.doi.org/10.3732/apps.1300024
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