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A new R package, exsic, to assist taxonomists in creating indices(1)
• Premise of the study: Taxonomists manage large amounts of specimen data. This is usually initiated in spreadsheets and then converted for publication into locality lists and indices to associate collectors and collector numbers from herbarium sheets to identifications (exsiccatae). This conversion...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105032/ https://www.ncbi.nlm.nih.gov/pubmed/25202559 http://dx.doi.org/10.3732/apps.1300024 |
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author | Simon, Reinhard Spooner, David M. |
author_facet | Simon, Reinhard Spooner, David M. |
author_sort | Simon, Reinhard |
collection | PubMed |
description | • Premise of the study: Taxonomists manage large amounts of specimen data. This is usually initiated in spreadsheets and then converted for publication into locality lists and indices to associate collectors and collector numbers from herbarium sheets to identifications (exsiccatae). This conversion process is mostly done by hand and is time-consuming, cumbersome, and error-prone. • Methods and Results: We constructed a tool, ‘exsic,’ based on the statistical software R. The exsic function is part of the R package ‘exsic’ and produces specimen citations and exsiccatae conforming to four related formats. • Conclusions: The tool increases speed, efficiency, and accuracy to convert raw spreadsheet tables to publication-ready content. |
format | Online Article Text |
id | pubmed-4105032 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41050322014-09-08 A new R package, exsic, to assist taxonomists in creating indices(1) Simon, Reinhard Spooner, David M. Appl Plant Sci Software Note • Premise of the study: Taxonomists manage large amounts of specimen data. This is usually initiated in spreadsheets and then converted for publication into locality lists and indices to associate collectors and collector numbers from herbarium sheets to identifications (exsiccatae). This conversion process is mostly done by hand and is time-consuming, cumbersome, and error-prone. • Methods and Results: We constructed a tool, ‘exsic,’ based on the statistical software R. The exsic function is part of the R package ‘exsic’ and produces specimen citations and exsiccatae conforming to four related formats. • Conclusions: The tool increases speed, efficiency, and accuracy to convert raw spreadsheet tables to publication-ready content. Botanical Society of America 2013-06-07 /pmc/articles/PMC4105032/ /pubmed/25202559 http://dx.doi.org/10.3732/apps.1300024 Text en © 2013 Simon and Spooner. Published by the Botanical Society of America This article is a U.S. Government work and is in the public domain in the USA. |
spellingShingle | Software Note Simon, Reinhard Spooner, David M. A new R package, exsic, to assist taxonomists in creating indices(1) |
title | A new R package, exsic, to assist taxonomists in creating indices(1) |
title_full | A new R package, exsic, to assist taxonomists in creating indices(1) |
title_fullStr | A new R package, exsic, to assist taxonomists in creating indices(1) |
title_full_unstemmed | A new R package, exsic, to assist taxonomists in creating indices(1) |
title_short | A new R package, exsic, to assist taxonomists in creating indices(1) |
title_sort | new r package, exsic, to assist taxonomists in creating indices(1) |
topic | Software Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105032/ https://www.ncbi.nlm.nih.gov/pubmed/25202559 http://dx.doi.org/10.3732/apps.1300024 |
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