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New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)
• Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105034/ https://www.ncbi.nlm.nih.gov/pubmed/25202541 http://dx.doi.org/10.3732/apps.1200324 |
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author | Bessega, Cecilia F. Pometti, Carolina L. Miller, Joe T. Watts, Richard Saidman, Beatriz O. Vilardi, Juan C. |
author_facet | Bessega, Cecilia F. Pometti, Carolina L. Miller, Joe T. Watts, Richard Saidman, Beatriz O. Vilardi, Juan C. |
author_sort | Bessega, Cecilia F. |
collection | PubMed |
description | • Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis species from a 454 pyrosequencing run were optimized and characterized for studies in P. alba and P. chilensis. • Methods and Results: Twelve markers that were successfully amplified showed polymorphism in P. alba and P. chilensis. The number of alleles per locus ranged between two and seven and heterozygosity estimates ranged from 0.2 to 0.8. Most of these loci cross-amplify in P. ruscifolia, P. flexuosa, P. kuntzei, P. glandulosa, and P. pallida. • Conclusions: These loci will enable genetic diversity studies of P. alba and P. chilensis and contribute to fine-scale population structure, indirect estimation of relatedness among individuals, and marker-assisted selection. |
format | Online Article Text |
id | pubmed-4105034 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41050342014-09-08 New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) Bessega, Cecilia F. Pometti, Carolina L. Miller, Joe T. Watts, Richard Saidman, Beatriz O. Vilardi, Juan C. Appl Plant Sci Primer Note • Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis species from a 454 pyrosequencing run were optimized and characterized for studies in P. alba and P. chilensis. • Methods and Results: Twelve markers that were successfully amplified showed polymorphism in P. alba and P. chilensis. The number of alleles per locus ranged between two and seven and heterozygosity estimates ranged from 0.2 to 0.8. Most of these loci cross-amplify in P. ruscifolia, P. flexuosa, P. kuntzei, P. glandulosa, and P. pallida. • Conclusions: These loci will enable genetic diversity studies of P. alba and P. chilensis and contribute to fine-scale population structure, indirect estimation of relatedness among individuals, and marker-assisted selection. Botanical Society of America 2013-04-23 /pmc/articles/PMC4105034/ /pubmed/25202541 http://dx.doi.org/10.3732/apps.1200324 Text en © 2013 Botanical Society of America |
spellingShingle | Primer Note Bessega, Cecilia F. Pometti, Carolina L. Miller, Joe T. Watts, Richard Saidman, Beatriz O. Vilardi, Juan C. New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) |
title | New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) |
title_full | New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) |
title_fullStr | New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) |
title_full_unstemmed | New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) |
title_short | New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) |
title_sort | new microsatellite loci for prosopis alba and p. chilensis (fabaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105034/ https://www.ncbi.nlm.nih.gov/pubmed/25202541 http://dx.doi.org/10.3732/apps.1200324 |
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