Cargando…

New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)

• Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis...

Descripción completa

Detalles Bibliográficos
Autores principales: Bessega, Cecilia F., Pometti, Carolina L., Miller, Joe T., Watts, Richard, Saidman, Beatriz O., Vilardi, Juan C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105034/
https://www.ncbi.nlm.nih.gov/pubmed/25202541
http://dx.doi.org/10.3732/apps.1200324
_version_ 1782327304242855936
author Bessega, Cecilia F.
Pometti, Carolina L.
Miller, Joe T.
Watts, Richard
Saidman, Beatriz O.
Vilardi, Juan C.
author_facet Bessega, Cecilia F.
Pometti, Carolina L.
Miller, Joe T.
Watts, Richard
Saidman, Beatriz O.
Vilardi, Juan C.
author_sort Bessega, Cecilia F.
collection PubMed
description • Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis species from a 454 pyrosequencing run were optimized and characterized for studies in P. alba and P. chilensis. • Methods and Results: Twelve markers that were successfully amplified showed polymorphism in P. alba and P. chilensis. The number of alleles per locus ranged between two and seven and heterozygosity estimates ranged from 0.2 to 0.8. Most of these loci cross-amplify in P. ruscifolia, P. flexuosa, P. kuntzei, P. glandulosa, and P. pallida. • Conclusions: These loci will enable genetic diversity studies of P. alba and P. chilensis and contribute to fine-scale population structure, indirect estimation of relatedness among individuals, and marker-assisted selection.
format Online
Article
Text
id pubmed-4105034
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-41050342014-09-08 New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1) Bessega, Cecilia F. Pometti, Carolina L. Miller, Joe T. Watts, Richard Saidman, Beatriz O. Vilardi, Juan C. Appl Plant Sci Primer Note • Premise of the study: As only six useful microsatellite loci that exhibit broad cross-amplification are so far available for Prosopis species, it is necessary to develop a larger number of codominant markers for population genetic studies. Simple sequence repeat (SSR) markers obtained for Prosopis species from a 454 pyrosequencing run were optimized and characterized for studies in P. alba and P. chilensis. • Methods and Results: Twelve markers that were successfully amplified showed polymorphism in P. alba and P. chilensis. The number of alleles per locus ranged between two and seven and heterozygosity estimates ranged from 0.2 to 0.8. Most of these loci cross-amplify in P. ruscifolia, P. flexuosa, P. kuntzei, P. glandulosa, and P. pallida. • Conclusions: These loci will enable genetic diversity studies of P. alba and P. chilensis and contribute to fine-scale population structure, indirect estimation of relatedness among individuals, and marker-assisted selection. Botanical Society of America 2013-04-23 /pmc/articles/PMC4105034/ /pubmed/25202541 http://dx.doi.org/10.3732/apps.1200324 Text en © 2013 Botanical Society of America
spellingShingle Primer Note
Bessega, Cecilia F.
Pometti, Carolina L.
Miller, Joe T.
Watts, Richard
Saidman, Beatriz O.
Vilardi, Juan C.
New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)
title New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)
title_full New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)
title_fullStr New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)
title_full_unstemmed New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)
title_short New microsatellite loci for Prosopis alba and P. chilensis (Fabaceae)(1)
title_sort new microsatellite loci for prosopis alba and p. chilensis (fabaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105034/
https://www.ncbi.nlm.nih.gov/pubmed/25202541
http://dx.doi.org/10.3732/apps.1200324
work_keys_str_mv AT bessegaceciliaf newmicrosatellitelociforprosopisalbaandpchilensisfabaceae1
AT pometticarolinal newmicrosatellitelociforprosopisalbaandpchilensisfabaceae1
AT millerjoet newmicrosatellitelociforprosopisalbaandpchilensisfabaceae1
AT wattsrichard newmicrosatellitelociforprosopisalbaandpchilensisfabaceae1
AT saidmanbeatrizo newmicrosatellitelociforprosopisalbaandpchilensisfabaceae1
AT vilardijuanc newmicrosatellitelociforprosopisalbaandpchilensisfabaceae1