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GrainScan: a low cost, fast method for grain size and colour measurements

BACKGROUND: Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of gra...

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Autores principales: Whan, Alex P, Smith, Alison B, Cavanagh, Colin R, Ral, Jean-Philippe F, Shaw, Lindsay M, Howitt, Crispin A, Bischof, Leanne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105244/
https://www.ncbi.nlm.nih.gov/pubmed/25050131
http://dx.doi.org/10.1186/1746-4811-10-23
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author Whan, Alex P
Smith, Alison B
Cavanagh, Colin R
Ral, Jean-Philippe F
Shaw, Lindsay M
Howitt, Crispin A
Bischof, Leanne
author_facet Whan, Alex P
Smith, Alison B
Cavanagh, Colin R
Ral, Jean-Philippe F
Shaw, Lindsay M
Howitt, Crispin A
Bischof, Leanne
author_sort Whan, Alex P
collection PubMed
description BACKGROUND: Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. RESULTS: We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. CONCLUSION: By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available.
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spelling pubmed-41052442014-07-22 GrainScan: a low cost, fast method for grain size and colour measurements Whan, Alex P Smith, Alison B Cavanagh, Colin R Ral, Jean-Philippe F Shaw, Lindsay M Howitt, Crispin A Bischof, Leanne Plant Methods Methodology BACKGROUND: Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. RESULTS: We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. CONCLUSION: By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. BioMed Central 2014-07-08 /pmc/articles/PMC4105244/ /pubmed/25050131 http://dx.doi.org/10.1186/1746-4811-10-23 Text en Copyright © 2014 Whan et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology
Whan, Alex P
Smith, Alison B
Cavanagh, Colin R
Ral, Jean-Philippe F
Shaw, Lindsay M
Howitt, Crispin A
Bischof, Leanne
GrainScan: a low cost, fast method for grain size and colour measurements
title GrainScan: a low cost, fast method for grain size and colour measurements
title_full GrainScan: a low cost, fast method for grain size and colour measurements
title_fullStr GrainScan: a low cost, fast method for grain size and colour measurements
title_full_unstemmed GrainScan: a low cost, fast method for grain size and colour measurements
title_short GrainScan: a low cost, fast method for grain size and colour measurements
title_sort grainscan: a low cost, fast method for grain size and colour measurements
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105244/
https://www.ncbi.nlm.nih.gov/pubmed/25050131
http://dx.doi.org/10.1186/1746-4811-10-23
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