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Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1)
• Premise of the study: Polymorphic microsatellite markers were developed for the symbiotic green alga Trebouxia decolorans to study fine-scale population structure and clonal diversity. • Methods and Results: Using Illumina pyrosequencing, 20 microsatellite primer sets were developed for T. decolor...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105286/ https://www.ncbi.nlm.nih.gov/pubmed/25202529 http://dx.doi.org/10.3732/apps.1200400 |
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author | Dal Grande, Francesco Beck, Andreas Singh, Garima Schmitt, Imke |
author_facet | Dal Grande, Francesco Beck, Andreas Singh, Garima Schmitt, Imke |
author_sort | Dal Grande, Francesco |
collection | PubMed |
description | • Premise of the study: Polymorphic microsatellite markers were developed for the symbiotic green alga Trebouxia decolorans to study fine-scale population structure and clonal diversity. • Methods and Results: Using Illumina pyrosequencing, 20 microsatellite primer sets were developed for T. decolorans. The primer sets were tested on 43 individuals sampled from four subpopulations in Germany. The primers amplified di-, tri-, and tetranucleotide repeats with three to 15 alleles per locus, and the unbiased haploid diversity per locus ranged from 0.636 to 0.821. • Conclusions: The identified microsatellite markers will be useful to study the genetic diversity, dispersal, and reproductive mode of this common lichen photobiont. |
format | Online Article Text |
id | pubmed-4105286 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41052862014-09-08 Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1) Dal Grande, Francesco Beck, Andreas Singh, Garima Schmitt, Imke Appl Plant Sci Primer Note • Premise of the study: Polymorphic microsatellite markers were developed for the symbiotic green alga Trebouxia decolorans to study fine-scale population structure and clonal diversity. • Methods and Results: Using Illumina pyrosequencing, 20 microsatellite primer sets were developed for T. decolorans. The primer sets were tested on 43 individuals sampled from four subpopulations in Germany. The primers amplified di-, tri-, and tetranucleotide repeats with three to 15 alleles per locus, and the unbiased haploid diversity per locus ranged from 0.636 to 0.821. • Conclusions: The identified microsatellite markers will be useful to study the genetic diversity, dispersal, and reproductive mode of this common lichen photobiont. Botanical Society of America 2013-02-15 /pmc/articles/PMC4105286/ /pubmed/25202529 http://dx.doi.org/10.3732/apps.1200400 Text en © 2013 Botanical Society of America |
spellingShingle | Primer Note Dal Grande, Francesco Beck, Andreas Singh, Garima Schmitt, Imke Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1) |
title | Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1) |
title_full | Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1) |
title_fullStr | Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1) |
title_full_unstemmed | Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1) |
title_short | Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae)(1) |
title_sort | microsatellite primers in the lichen symbiotic alga trebouxia decolorans (trebouxiophyceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105286/ https://www.ncbi.nlm.nih.gov/pubmed/25202529 http://dx.doi.org/10.3732/apps.1200400 |
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