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Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1)

• Premise of the study: Pinus wangii is an endemic and endangered species in southwestern China, and microsatellite primers were developed to characterize its genetic diversity and population structure. • Methods and Results: Using the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO)...

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Autores principales: Dou, Jing-Jing, Zhou, Ren-Chao, Tang, An-Jun, Ge, Xue-Jun, Wu, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105365/
https://www.ncbi.nlm.nih.gov/pubmed/25202511
http://dx.doi.org/10.3732/apps.1200134
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author Dou, Jing-Jing
Zhou, Ren-Chao
Tang, An-Jun
Ge, Xue-Jun
Wu, Wei
author_facet Dou, Jing-Jing
Zhou, Ren-Chao
Tang, An-Jun
Ge, Xue-Jun
Wu, Wei
author_sort Dou, Jing-Jing
collection PubMed
description • Premise of the study: Pinus wangii is an endemic and endangered species in southwestern China, and microsatellite primers were developed to characterize its genetic diversity and population structure. • Methods and Results: Using the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) protocol, nine sets of microsatellite primers were developed in P. wangii. One population with 26 individuals of P. wangii, as well as 11 individuals each for two congeneric species, P. taiwanensis and P. squamata, were used to test their polymorphism and transferability. The number of alleles per locus ranged from one to seven with an average of 3.7, and the observed heterozygosity and expected heterozygosity ranged from 0 to 0.91 and 0 to 0.75, respectively. • Conclusions: We developed nine sets of polymorphic microsatellite loci that are suitable for investigating genetic diversity and population structure of P. wangii, and these markers may be useful for other Pinus species.
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spelling pubmed-41053652014-09-08 Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1) Dou, Jing-Jing Zhou, Ren-Chao Tang, An-Jun Ge, Xue-Jun Wu, Wei Appl Plant Sci Primer Note • Premise of the study: Pinus wangii is an endemic and endangered species in southwestern China, and microsatellite primers were developed to characterize its genetic diversity and population structure. • Methods and Results: Using the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) protocol, nine sets of microsatellite primers were developed in P. wangii. One population with 26 individuals of P. wangii, as well as 11 individuals each for two congeneric species, P. taiwanensis and P. squamata, were used to test their polymorphism and transferability. The number of alleles per locus ranged from one to seven with an average of 3.7, and the observed heterozygosity and expected heterozygosity ranged from 0 to 0.91 and 0 to 0.75, respectively. • Conclusions: We developed nine sets of polymorphic microsatellite loci that are suitable for investigating genetic diversity and population structure of P. wangii, and these markers may be useful for other Pinus species. Botanical Society of America 2013-01-31 /pmc/articles/PMC4105365/ /pubmed/25202511 http://dx.doi.org/10.3732/apps.1200134 Text en © 2013 Botanical Society of America
spellingShingle Primer Note
Dou, Jing-Jing
Zhou, Ren-Chao
Tang, An-Jun
Ge, Xue-Jun
Wu, Wei
Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1)
title Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1)
title_full Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1)
title_fullStr Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1)
title_full_unstemmed Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1)
title_short Development and characterization of nine microsatellites for an endangered tree, Pinus wangii (Pinaceae)(1)
title_sort development and characterization of nine microsatellites for an endangered tree, pinus wangii (pinaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105365/
https://www.ncbi.nlm.nih.gov/pubmed/25202511
http://dx.doi.org/10.3732/apps.1200134
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