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Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)

• Premise of the study: Microsatellite markers were developed and characterized to analyze genetic diversity within Lagerstroemia cultivars and related species. • Methods and Results: Using simple sequence repeat (SSR)–enriched libraries, 11 species-specific polymorphic genomic SSRs were developed f...

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Detalles Bibliográficos
Autores principales: Liu, Yang, He, Dan, Cai, Ming, Tang, Wan, Li, Xiao-Yuan, Pan, Hui-Tang, Zhang, Qi-Xiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105366/
https://www.ncbi.nlm.nih.gov/pubmed/25202512
http://dx.doi.org/10.3732/apps.1200203
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author Liu, Yang
He, Dan
Cai, Ming
Tang, Wan
Li, Xiao-Yuan
Pan, Hui-Tang
Zhang, Qi-Xiang
author_facet Liu, Yang
He, Dan
Cai, Ming
Tang, Wan
Li, Xiao-Yuan
Pan, Hui-Tang
Zhang, Qi-Xiang
author_sort Liu, Yang
collection PubMed
description • Premise of the study: Microsatellite markers were developed and characterized to analyze genetic diversity within Lagerstroemia cultivars and related species. • Methods and Results: Using simple sequence repeat (SSR)–enriched libraries, 11 species-specific polymorphic genomic SSRs were developed from L. indica ‘Hong Die Fei Wu’. All primers were tested on 48 L. indica individuals from China, the United States, and France. The primers amplified four to 12 alleles per locus, including di-, tri-, and tetranucleotide repeats. Observed and expected heterozygosities ranged from 0.1875 to 0.7609 and 0.2836 to 0.8385, respectively. The primers were also highly cross-transferrable to L. subcostata, L. limii, L. fauriei, L. caudata, and L. speciosa. • Conclusions: The new primers will enlarge the bank of SSRs available to genetic research of Lagerstroemia. These SSR markers will facilitate population genetics and molecular marker–assisted selection of L. indica.
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spelling pubmed-41053662014-09-08 Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) Liu, Yang He, Dan Cai, Ming Tang, Wan Li, Xiao-Yuan Pan, Hui-Tang Zhang, Qi-Xiang Appl Plant Sci Primer Note • Premise of the study: Microsatellite markers were developed and characterized to analyze genetic diversity within Lagerstroemia cultivars and related species. • Methods and Results: Using simple sequence repeat (SSR)–enriched libraries, 11 species-specific polymorphic genomic SSRs were developed from L. indica ‘Hong Die Fei Wu’. All primers were tested on 48 L. indica individuals from China, the United States, and France. The primers amplified four to 12 alleles per locus, including di-, tri-, and tetranucleotide repeats. Observed and expected heterozygosities ranged from 0.1875 to 0.7609 and 0.2836 to 0.8385, respectively. The primers were also highly cross-transferrable to L. subcostata, L. limii, L. fauriei, L. caudata, and L. speciosa. • Conclusions: The new primers will enlarge the bank of SSRs available to genetic research of Lagerstroemia. These SSR markers will facilitate population genetics and molecular marker–assisted selection of L. indica. Botanical Society of America 2013-01-31 /pmc/articles/PMC4105366/ /pubmed/25202512 http://dx.doi.org/10.3732/apps.1200203 Text en © 2013 Botanical Society of America
spellingShingle Primer Note
Liu, Yang
He, Dan
Cai, Ming
Tang, Wan
Li, Xiao-Yuan
Pan, Hui-Tang
Zhang, Qi-Xiang
Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)
title Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)
title_full Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)
title_fullStr Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)
title_full_unstemmed Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)
title_short Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)
title_sort development of microsatellite markers for lagerstroemia indica (lythraceae) and related species(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105366/
https://www.ncbi.nlm.nih.gov/pubmed/25202512
http://dx.doi.org/10.3732/apps.1200203
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