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Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1)
• Premise of the study: Microsatellite markers were developed and characterized to analyze genetic diversity within Lagerstroemia cultivars and related species. • Methods and Results: Using simple sequence repeat (SSR)–enriched libraries, 11 species-specific polymorphic genomic SSRs were developed f...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105366/ https://www.ncbi.nlm.nih.gov/pubmed/25202512 http://dx.doi.org/10.3732/apps.1200203 |
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author | Liu, Yang He, Dan Cai, Ming Tang, Wan Li, Xiao-Yuan Pan, Hui-Tang Zhang, Qi-Xiang |
author_facet | Liu, Yang He, Dan Cai, Ming Tang, Wan Li, Xiao-Yuan Pan, Hui-Tang Zhang, Qi-Xiang |
author_sort | Liu, Yang |
collection | PubMed |
description | • Premise of the study: Microsatellite markers were developed and characterized to analyze genetic diversity within Lagerstroemia cultivars and related species. • Methods and Results: Using simple sequence repeat (SSR)–enriched libraries, 11 species-specific polymorphic genomic SSRs were developed from L. indica ‘Hong Die Fei Wu’. All primers were tested on 48 L. indica individuals from China, the United States, and France. The primers amplified four to 12 alleles per locus, including di-, tri-, and tetranucleotide repeats. Observed and expected heterozygosities ranged from 0.1875 to 0.7609 and 0.2836 to 0.8385, respectively. The primers were also highly cross-transferrable to L. subcostata, L. limii, L. fauriei, L. caudata, and L. speciosa. • Conclusions: The new primers will enlarge the bank of SSRs available to genetic research of Lagerstroemia. These SSR markers will facilitate population genetics and molecular marker–assisted selection of L. indica. |
format | Online Article Text |
id | pubmed-4105366 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41053662014-09-08 Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) Liu, Yang He, Dan Cai, Ming Tang, Wan Li, Xiao-Yuan Pan, Hui-Tang Zhang, Qi-Xiang Appl Plant Sci Primer Note • Premise of the study: Microsatellite markers were developed and characterized to analyze genetic diversity within Lagerstroemia cultivars and related species. • Methods and Results: Using simple sequence repeat (SSR)–enriched libraries, 11 species-specific polymorphic genomic SSRs were developed from L. indica ‘Hong Die Fei Wu’. All primers were tested on 48 L. indica individuals from China, the United States, and France. The primers amplified four to 12 alleles per locus, including di-, tri-, and tetranucleotide repeats. Observed and expected heterozygosities ranged from 0.1875 to 0.7609 and 0.2836 to 0.8385, respectively. The primers were also highly cross-transferrable to L. subcostata, L. limii, L. fauriei, L. caudata, and L. speciosa. • Conclusions: The new primers will enlarge the bank of SSRs available to genetic research of Lagerstroemia. These SSR markers will facilitate population genetics and molecular marker–assisted selection of L. indica. Botanical Society of America 2013-01-31 /pmc/articles/PMC4105366/ /pubmed/25202512 http://dx.doi.org/10.3732/apps.1200203 Text en © 2013 Botanical Society of America |
spellingShingle | Primer Note Liu, Yang He, Dan Cai, Ming Tang, Wan Li, Xiao-Yuan Pan, Hui-Tang Zhang, Qi-Xiang Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) |
title | Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) |
title_full | Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) |
title_fullStr | Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) |
title_full_unstemmed | Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) |
title_short | Development of microsatellite markers for Lagerstroemia indica (Lythraceae) and related species(1) |
title_sort | development of microsatellite markers for lagerstroemia indica (lythraceae) and related species(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105366/ https://www.ncbi.nlm.nih.gov/pubmed/25202512 http://dx.doi.org/10.3732/apps.1200203 |
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