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Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
BACKGROUND: Termitomyces heimii is a basidiomycete fungus that has a symbiotic relationship with termites, and it is an edible mushroom with a unique flavour and texture. T. heimii is also one of the most difficult mushrooms to cultivate throughout the world. Little is known about the growth and dev...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105490/ https://www.ncbi.nlm.nih.gov/pubmed/25053143 http://dx.doi.org/10.1186/0717-6287-47-30 |
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author | Rahmad, Norasfaliza Al-Obaidi, Jameel R Rashid, Noraswati Mohd Nor Zean, Ng Boon Yusoff, Mohd Hafis Yuswan Mohd Shaharuddin, Nur Syahidah Jamil, Nor Azreen Mohd Saleh, Norihan Mohd |
author_facet | Rahmad, Norasfaliza Al-Obaidi, Jameel R Rashid, Noraswati Mohd Nor Zean, Ng Boon Yusoff, Mohd Hafis Yuswan Mohd Shaharuddin, Nur Syahidah Jamil, Nor Azreen Mohd Saleh, Norihan Mohd |
author_sort | Rahmad, Norasfaliza |
collection | PubMed |
description | BACKGROUND: Termitomyces heimii is a basidiomycete fungus that has a symbiotic relationship with termites, and it is an edible mushroom with a unique flavour and texture. T. heimii is also one of the most difficult mushrooms to cultivate throughout the world. Little is known about the growth and development of these mushrooms, and the available information is insufficient or poor. The purpose of this study was to provide a base of knowledge regarding the biological processes involved in the development of T. heimii. The proteomic method of 2 dimensional difference gel electrophoresis 2D-DIGE was used to determine and examine the protein profiles of each developmental stage (mycelium, primordium and fruiting body). Total proteins were extracted by TCA-acetone precipitation. RESULTS: A total of 271 protein spots were detected by electrophoresis covering pH 3–10 and 10–250 kDa. Selected protein spots were subjected to mass spectrometric analyses with matrix-assisted laser desorption/ionisation (MALDI TOF/TOF). Nineteen protein spots were identified based on peptide mass fingerprinting by matching peptide fragments to the NCBI non-redundant database using MASCOT software. The 19 protein spots were categorised into four major groups through KEGG pathway analysis, as follows: carbohydrate metabolism, energy metabolism, amino acid metabolism and response to environmental stress. CONCLUSIONS: The results from our study show that there is a clear correlation between the changes in protein expression that occur during different developmental stages. Enzymes related to cell wall synthesis were most highly expressed during fruiting body formation compared to the mycelium and primordial stages. Moreover, enzymes involved in cell wall component degradation were up-regulated in the earlier stages of mushroom development. |
format | Online Article Text |
id | pubmed-4105490 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-41054902014-07-23 Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii Rahmad, Norasfaliza Al-Obaidi, Jameel R Rashid, Noraswati Mohd Nor Zean, Ng Boon Yusoff, Mohd Hafis Yuswan Mohd Shaharuddin, Nur Syahidah Jamil, Nor Azreen Mohd Saleh, Norihan Mohd Biol Res Research Article BACKGROUND: Termitomyces heimii is a basidiomycete fungus that has a symbiotic relationship with termites, and it is an edible mushroom with a unique flavour and texture. T. heimii is also one of the most difficult mushrooms to cultivate throughout the world. Little is known about the growth and development of these mushrooms, and the available information is insufficient or poor. The purpose of this study was to provide a base of knowledge regarding the biological processes involved in the development of T. heimii. The proteomic method of 2 dimensional difference gel electrophoresis 2D-DIGE was used to determine and examine the protein profiles of each developmental stage (mycelium, primordium and fruiting body). Total proteins were extracted by TCA-acetone precipitation. RESULTS: A total of 271 protein spots were detected by electrophoresis covering pH 3–10 and 10–250 kDa. Selected protein spots were subjected to mass spectrometric analyses with matrix-assisted laser desorption/ionisation (MALDI TOF/TOF). Nineteen protein spots were identified based on peptide mass fingerprinting by matching peptide fragments to the NCBI non-redundant database using MASCOT software. The 19 protein spots were categorised into four major groups through KEGG pathway analysis, as follows: carbohydrate metabolism, energy metabolism, amino acid metabolism and response to environmental stress. CONCLUSIONS: The results from our study show that there is a clear correlation between the changes in protein expression that occur during different developmental stages. Enzymes related to cell wall synthesis were most highly expressed during fruiting body formation compared to the mycelium and primordial stages. Moreover, enzymes involved in cell wall component degradation were up-regulated in the earlier stages of mushroom development. BioMed Central 2014-07-03 /pmc/articles/PMC4105490/ /pubmed/25053143 http://dx.doi.org/10.1186/0717-6287-47-30 Text en © Rahmad et al.; licensee BioMed Central Ltd. 2014 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Rahmad, Norasfaliza Al-Obaidi, Jameel R Rashid, Noraswati Mohd Nor Zean, Ng Boon Yusoff, Mohd Hafis Yuswan Mohd Shaharuddin, Nur Syahidah Jamil, Nor Azreen Mohd Saleh, Norihan Mohd Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii |
title | Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii |
title_full | Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii |
title_fullStr | Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii |
title_full_unstemmed | Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii |
title_short | Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii |
title_sort | comparative proteomic analysis of different developmental stages of the edible mushroom termitomyces heimii |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105490/ https://www.ncbi.nlm.nih.gov/pubmed/25053143 http://dx.doi.org/10.1186/0717-6287-47-30 |
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