Cargando…

Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii

BACKGROUND: Termitomyces heimii is a basidiomycete fungus that has a symbiotic relationship with termites, and it is an edible mushroom with a unique flavour and texture. T. heimii is also one of the most difficult mushrooms to cultivate throughout the world. Little is known about the growth and dev...

Descripción completa

Detalles Bibliográficos
Autores principales: Rahmad, Norasfaliza, Al-Obaidi, Jameel R, Rashid, Noraswati Mohd Nor, Zean, Ng Boon, Yusoff, Mohd Hafis Yuswan Mohd, Shaharuddin, Nur Syahidah, Jamil, Nor Azreen Mohd, Saleh, Norihan Mohd
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105490/
https://www.ncbi.nlm.nih.gov/pubmed/25053143
http://dx.doi.org/10.1186/0717-6287-47-30
_version_ 1782327374737571840
author Rahmad, Norasfaliza
Al-Obaidi, Jameel R
Rashid, Noraswati Mohd Nor
Zean, Ng Boon
Yusoff, Mohd Hafis Yuswan Mohd
Shaharuddin, Nur Syahidah
Jamil, Nor Azreen Mohd
Saleh, Norihan Mohd
author_facet Rahmad, Norasfaliza
Al-Obaidi, Jameel R
Rashid, Noraswati Mohd Nor
Zean, Ng Boon
Yusoff, Mohd Hafis Yuswan Mohd
Shaharuddin, Nur Syahidah
Jamil, Nor Azreen Mohd
Saleh, Norihan Mohd
author_sort Rahmad, Norasfaliza
collection PubMed
description BACKGROUND: Termitomyces heimii is a basidiomycete fungus that has a symbiotic relationship with termites, and it is an edible mushroom with a unique flavour and texture. T. heimii is also one of the most difficult mushrooms to cultivate throughout the world. Little is known about the growth and development of these mushrooms, and the available information is insufficient or poor. The purpose of this study was to provide a base of knowledge regarding the biological processes involved in the development of T. heimii. The proteomic method of 2 dimensional difference gel electrophoresis 2D-DIGE was used to determine and examine the protein profiles of each developmental stage (mycelium, primordium and fruiting body). Total proteins were extracted by TCA-acetone precipitation. RESULTS: A total of 271 protein spots were detected by electrophoresis covering pH 3–10 and 10–250 kDa. Selected protein spots were subjected to mass spectrometric analyses with matrix-assisted laser desorption/ionisation (MALDI TOF/TOF). Nineteen protein spots were identified based on peptide mass fingerprinting by matching peptide fragments to the NCBI non-redundant database using MASCOT software. The 19 protein spots were categorised into four major groups through KEGG pathway analysis, as follows: carbohydrate metabolism, energy metabolism, amino acid metabolism and response to environmental stress. CONCLUSIONS: The results from our study show that there is a clear correlation between the changes in protein expression that occur during different developmental stages. Enzymes related to cell wall synthesis were most highly expressed during fruiting body formation compared to the mycelium and primordial stages. Moreover, enzymes involved in cell wall component degradation were up-regulated in the earlier stages of mushroom development.
format Online
Article
Text
id pubmed-4105490
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-41054902014-07-23 Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii Rahmad, Norasfaliza Al-Obaidi, Jameel R Rashid, Noraswati Mohd Nor Zean, Ng Boon Yusoff, Mohd Hafis Yuswan Mohd Shaharuddin, Nur Syahidah Jamil, Nor Azreen Mohd Saleh, Norihan Mohd Biol Res Research Article BACKGROUND: Termitomyces heimii is a basidiomycete fungus that has a symbiotic relationship with termites, and it is an edible mushroom with a unique flavour and texture. T. heimii is also one of the most difficult mushrooms to cultivate throughout the world. Little is known about the growth and development of these mushrooms, and the available information is insufficient or poor. The purpose of this study was to provide a base of knowledge regarding the biological processes involved in the development of T. heimii. The proteomic method of 2 dimensional difference gel electrophoresis 2D-DIGE was used to determine and examine the protein profiles of each developmental stage (mycelium, primordium and fruiting body). Total proteins were extracted by TCA-acetone precipitation. RESULTS: A total of 271 protein spots were detected by electrophoresis covering pH 3–10 and 10–250 kDa. Selected protein spots were subjected to mass spectrometric analyses with matrix-assisted laser desorption/ionisation (MALDI TOF/TOF). Nineteen protein spots were identified based on peptide mass fingerprinting by matching peptide fragments to the NCBI non-redundant database using MASCOT software. The 19 protein spots were categorised into four major groups through KEGG pathway analysis, as follows: carbohydrate metabolism, energy metabolism, amino acid metabolism and response to environmental stress. CONCLUSIONS: The results from our study show that there is a clear correlation between the changes in protein expression that occur during different developmental stages. Enzymes related to cell wall synthesis were most highly expressed during fruiting body formation compared to the mycelium and primordial stages. Moreover, enzymes involved in cell wall component degradation were up-regulated in the earlier stages of mushroom development. BioMed Central 2014-07-03 /pmc/articles/PMC4105490/ /pubmed/25053143 http://dx.doi.org/10.1186/0717-6287-47-30 Text en © Rahmad et al.; licensee BioMed Central Ltd. 2014 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Rahmad, Norasfaliza
Al-Obaidi, Jameel R
Rashid, Noraswati Mohd Nor
Zean, Ng Boon
Yusoff, Mohd Hafis Yuswan Mohd
Shaharuddin, Nur Syahidah
Jamil, Nor Azreen Mohd
Saleh, Norihan Mohd
Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
title Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
title_full Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
title_fullStr Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
title_full_unstemmed Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
title_short Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
title_sort comparative proteomic analysis of different developmental stages of the edible mushroom termitomyces heimii
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105490/
https://www.ncbi.nlm.nih.gov/pubmed/25053143
http://dx.doi.org/10.1186/0717-6287-47-30
work_keys_str_mv AT rahmadnorasfaliza comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii
AT alobaidijameelr comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii
AT rashidnoraswatimohdnor comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii
AT zeanngboon comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii
AT yusoffmohdhafisyuswanmohd comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii
AT shaharuddinnursyahidah comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii
AT jamilnorazreenmohd comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii
AT salehnorihanmohd comparativeproteomicanalysisofdifferentdevelopmentalstagesoftheediblemushroomtermitomycesheimii