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Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis
Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PD...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4106868/ https://www.ncbi.nlm.nih.gov/pubmed/25050616 http://dx.doi.org/10.1371/journal.pone.0102718 |
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author | Guo, Yina Sun, Mingzhu Garfinkel, Alan Zhao, Xin |
author_facet | Guo, Yina Sun, Mingzhu Garfinkel, Alan Zhao, Xin |
author_sort | Guo, Yina |
collection | PubMed |
description | Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE), due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth) direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1) a classic activator/inhibitor system along the growing stalk, and 2) the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1) side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2) tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3) when both instabilities are satisfied, tip bifurcation occurs together with side branching. |
format | Online Article Text |
id | pubmed-4106868 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41068682014-07-23 Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis Guo, Yina Sun, Mingzhu Garfinkel, Alan Zhao, Xin PLoS One Research Article Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE), due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth) direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1) a classic activator/inhibitor system along the growing stalk, and 2) the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1) side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2) tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3) when both instabilities are satisfied, tip bifurcation occurs together with side branching. Public Library of Science 2014-07-22 /pmc/articles/PMC4106868/ /pubmed/25050616 http://dx.doi.org/10.1371/journal.pone.0102718 Text en © 2014 Guo et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Guo, Yina Sun, Mingzhu Garfinkel, Alan Zhao, Xin Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis |
title | Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis |
title_full | Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis |
title_fullStr | Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis |
title_full_unstemmed | Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis |
title_short | Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis |
title_sort | mechanisms of side branching and tip splitting in a model of branching morphogenesis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4106868/ https://www.ncbi.nlm.nih.gov/pubmed/25050616 http://dx.doi.org/10.1371/journal.pone.0102718 |
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