Cargando…
The Genera of Fungi: fixing the application of type species of generic names
To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (G...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Mycological Association
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4107892/ https://www.ncbi.nlm.nih.gov/pubmed/25083414 http://dx.doi.org/10.5598/imafungus.2014.05.01.14 |
_version_ | 1782327670782033920 |
---|---|
author | Crous, Pedro W. Giraldo, Alejandra Hawksworth, David L. Robert, Vincent Kirk, Paul M. Guarro, Josep Robbertse, Barbara Schoch, Conrad L. Damm, Ulrike Trakunyingcharoen, Thippawan Groenewald, Johannes Z. |
author_facet | Crous, Pedro W. Giraldo, Alejandra Hawksworth, David L. Robert, Vincent Kirk, Paul M. Guarro, Josep Robbertse, Barbara Schoch, Conrad L. Damm, Ulrike Trakunyingcharoen, Thippawan Groenewald, Johannes Z. |
author_sort | Crous, Pedro W. |
collection | PubMed |
description | To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (GoF) was established, which will allow deposition of metadata linked to holo-, lecto-, neo- or epitype specimens, cultures and DNA sequence data of the type species of genera. Although there are presently more than 18 000 fungal genera described, we aim to initially focus on the subset of names that have been placed on the “Without-prejudice List of Protected Generic Names of Fungi” (see IMA Fungus 4(2): 381–443, 2013). To enable the global mycological community to keep track of typification events and avoid duplication, special MycoBank Typification identfiers (MBT) will be issued upon deposit of metadata in MycoBank. MycoBank is linked to GoF, thus deposited metadata of generic type species will be displayed in GoF (and vice versa), but will also be linked to Index Fungorum (IF) and the curated RefSeq Targeted Loci (RTL) database in GenBank at the National Center for Biotechnology Information (NCBI). This initial paper focuses on eight genera of appendaged coelomycetes, the type species of which are neo- or epitypified here: Bartalinia (Bartalinia robillardoides; Amphisphaeriaceae, Xylariales), Chaetospermum (Chaetospermum chaetosporum, incertae sedis, Sebacinales), Coniella (Coniella fragariae, Schizoparmaceae, Diaporthales), Crinitospora (Crinitospora pulchra, Melanconidaceae, Diaporthales), Eleutheromyces (Eleutheromyces subulatus, Helotiales), Kellermania (Kellermania yuccigena, Planistromataceae, Botryosphaeriales), Mastigosporium (Mastigosporium album, Helotiales), and Mycotribulus (Mycotribulus mirabilis, Agaricales). Authors interested in contributing accounts of individual genera to larger multi-authored papers to be published in IMA Fungus, should contact the associate editors listed below for the major groups of fungi on the List of Protected Generic Names for Fungi. |
format | Online Article Text |
id | pubmed-4107892 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | International Mycological Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-41078922014-07-31 The Genera of Fungi: fixing the application of type species of generic names Crous, Pedro W. Giraldo, Alejandra Hawksworth, David L. Robert, Vincent Kirk, Paul M. Guarro, Josep Robbertse, Barbara Schoch, Conrad L. Damm, Ulrike Trakunyingcharoen, Thippawan Groenewald, Johannes Z. IMA Fungus Article To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (GoF) was established, which will allow deposition of metadata linked to holo-, lecto-, neo- or epitype specimens, cultures and DNA sequence data of the type species of genera. Although there are presently more than 18 000 fungal genera described, we aim to initially focus on the subset of names that have been placed on the “Without-prejudice List of Protected Generic Names of Fungi” (see IMA Fungus 4(2): 381–443, 2013). To enable the global mycological community to keep track of typification events and avoid duplication, special MycoBank Typification identfiers (MBT) will be issued upon deposit of metadata in MycoBank. MycoBank is linked to GoF, thus deposited metadata of generic type species will be displayed in GoF (and vice versa), but will also be linked to Index Fungorum (IF) and the curated RefSeq Targeted Loci (RTL) database in GenBank at the National Center for Biotechnology Information (NCBI). This initial paper focuses on eight genera of appendaged coelomycetes, the type species of which are neo- or epitypified here: Bartalinia (Bartalinia robillardoides; Amphisphaeriaceae, Xylariales), Chaetospermum (Chaetospermum chaetosporum, incertae sedis, Sebacinales), Coniella (Coniella fragariae, Schizoparmaceae, Diaporthales), Crinitospora (Crinitospora pulchra, Melanconidaceae, Diaporthales), Eleutheromyces (Eleutheromyces subulatus, Helotiales), Kellermania (Kellermania yuccigena, Planistromataceae, Botryosphaeriales), Mastigosporium (Mastigosporium album, Helotiales), and Mycotribulus (Mycotribulus mirabilis, Agaricales). Authors interested in contributing accounts of individual genera to larger multi-authored papers to be published in IMA Fungus, should contact the associate editors listed below for the major groups of fungi on the List of Protected Generic Names for Fungi. International Mycological Association 2014-06-19 2014-06 /pmc/articles/PMC4107892/ /pubmed/25083414 http://dx.doi.org/10.5598/imafungus.2014.05.01.14 Text en © 2014 International Mycological Association http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. |
spellingShingle | Article Crous, Pedro W. Giraldo, Alejandra Hawksworth, David L. Robert, Vincent Kirk, Paul M. Guarro, Josep Robbertse, Barbara Schoch, Conrad L. Damm, Ulrike Trakunyingcharoen, Thippawan Groenewald, Johannes Z. The Genera of Fungi: fixing the application of type species of generic names |
title | The Genera of Fungi: fixing the application of type species of generic names |
title_full | The Genera of Fungi: fixing the application of type species of generic names |
title_fullStr | The Genera of Fungi: fixing the application of type species of generic names |
title_full_unstemmed | The Genera of Fungi: fixing the application of type species of generic names |
title_short | The Genera of Fungi: fixing the application of type species of generic names |
title_sort | genera of fungi: fixing the application of type species of generic names |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4107892/ https://www.ncbi.nlm.nih.gov/pubmed/25083414 http://dx.doi.org/10.5598/imafungus.2014.05.01.14 |
work_keys_str_mv | AT crouspedrow thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT giraldoalejandra thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT hawksworthdavidl thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT robertvincent thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT kirkpaulm thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT guarrojosep thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT robbertsebarbara thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT schochconradl thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT dammulrike thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT trakunyingcharoenthippawan thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT groenewaldjohannesz thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames AT crouspedrow generaoffungifixingtheapplicationoftypespeciesofgenericnames AT giraldoalejandra generaoffungifixingtheapplicationoftypespeciesofgenericnames AT hawksworthdavidl generaoffungifixingtheapplicationoftypespeciesofgenericnames AT robertvincent generaoffungifixingtheapplicationoftypespeciesofgenericnames AT kirkpaulm generaoffungifixingtheapplicationoftypespeciesofgenericnames AT guarrojosep generaoffungifixingtheapplicationoftypespeciesofgenericnames AT robbertsebarbara generaoffungifixingtheapplicationoftypespeciesofgenericnames AT schochconradl generaoffungifixingtheapplicationoftypespeciesofgenericnames AT dammulrike generaoffungifixingtheapplicationoftypespeciesofgenericnames AT trakunyingcharoenthippawan generaoffungifixingtheapplicationoftypespeciesofgenericnames AT groenewaldjohannesz generaoffungifixingtheapplicationoftypespeciesofgenericnames |