Cargando…

The Genera of Fungi: fixing the application of type species of generic names

To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (G...

Descripción completa

Detalles Bibliográficos
Autores principales: Crous, Pedro W., Giraldo, Alejandra, Hawksworth, David L., Robert, Vincent, Kirk, Paul M., Guarro, Josep, Robbertse, Barbara, Schoch, Conrad L., Damm, Ulrike, Trakunyingcharoen, Thippawan, Groenewald, Johannes Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Mycological Association 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4107892/
https://www.ncbi.nlm.nih.gov/pubmed/25083414
http://dx.doi.org/10.5598/imafungus.2014.05.01.14
_version_ 1782327670782033920
author Crous, Pedro W.
Giraldo, Alejandra
Hawksworth, David L.
Robert, Vincent
Kirk, Paul M.
Guarro, Josep
Robbertse, Barbara
Schoch, Conrad L.
Damm, Ulrike
Trakunyingcharoen, Thippawan
Groenewald, Johannes Z.
author_facet Crous, Pedro W.
Giraldo, Alejandra
Hawksworth, David L.
Robert, Vincent
Kirk, Paul M.
Guarro, Josep
Robbertse, Barbara
Schoch, Conrad L.
Damm, Ulrike
Trakunyingcharoen, Thippawan
Groenewald, Johannes Z.
author_sort Crous, Pedro W.
collection PubMed
description To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (GoF) was established, which will allow deposition of metadata linked to holo-, lecto-, neo- or epitype specimens, cultures and DNA sequence data of the type species of genera. Although there are presently more than 18 000 fungal genera described, we aim to initially focus on the subset of names that have been placed on the “Without-prejudice List of Protected Generic Names of Fungi” (see IMA Fungus 4(2): 381–443, 2013). To enable the global mycological community to keep track of typification events and avoid duplication, special MycoBank Typification identfiers (MBT) will be issued upon deposit of metadata in MycoBank. MycoBank is linked to GoF, thus deposited metadata of generic type species will be displayed in GoF (and vice versa), but will also be linked to Index Fungorum (IF) and the curated RefSeq Targeted Loci (RTL) database in GenBank at the National Center for Biotechnology Information (NCBI). This initial paper focuses on eight genera of appendaged coelomycetes, the type species of which are neo- or epitypified here: Bartalinia (Bartalinia robillardoides; Amphisphaeriaceae, Xylariales), Chaetospermum (Chaetospermum chaetosporum, incertae sedis, Sebacinales), Coniella (Coniella fragariae, Schizoparmaceae, Diaporthales), Crinitospora (Crinitospora pulchra, Melanconidaceae, Diaporthales), Eleutheromyces (Eleutheromyces subulatus, Helotiales), Kellermania (Kellermania yuccigena, Planistromataceae, Botryosphaeriales), Mastigosporium (Mastigosporium album, Helotiales), and Mycotribulus (Mycotribulus mirabilis, Agaricales). Authors interested in contributing accounts of individual genera to larger multi-authored papers to be published in IMA Fungus, should contact the associate editors listed below for the major groups of fungi on the List of Protected Generic Names for Fungi.
format Online
Article
Text
id pubmed-4107892
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher International Mycological Association
record_format MEDLINE/PubMed
spelling pubmed-41078922014-07-31 The Genera of Fungi: fixing the application of type species of generic names Crous, Pedro W. Giraldo, Alejandra Hawksworth, David L. Robert, Vincent Kirk, Paul M. Guarro, Josep Robbertse, Barbara Schoch, Conrad L. Damm, Ulrike Trakunyingcharoen, Thippawan Groenewald, Johannes Z. IMA Fungus Article To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (GoF) was established, which will allow deposition of metadata linked to holo-, lecto-, neo- or epitype specimens, cultures and DNA sequence data of the type species of genera. Although there are presently more than 18 000 fungal genera described, we aim to initially focus on the subset of names that have been placed on the “Without-prejudice List of Protected Generic Names of Fungi” (see IMA Fungus 4(2): 381–443, 2013). To enable the global mycological community to keep track of typification events and avoid duplication, special MycoBank Typification identfiers (MBT) will be issued upon deposit of metadata in MycoBank. MycoBank is linked to GoF, thus deposited metadata of generic type species will be displayed in GoF (and vice versa), but will also be linked to Index Fungorum (IF) and the curated RefSeq Targeted Loci (RTL) database in GenBank at the National Center for Biotechnology Information (NCBI). This initial paper focuses on eight genera of appendaged coelomycetes, the type species of which are neo- or epitypified here: Bartalinia (Bartalinia robillardoides; Amphisphaeriaceae, Xylariales), Chaetospermum (Chaetospermum chaetosporum, incertae sedis, Sebacinales), Coniella (Coniella fragariae, Schizoparmaceae, Diaporthales), Crinitospora (Crinitospora pulchra, Melanconidaceae, Diaporthales), Eleutheromyces (Eleutheromyces subulatus, Helotiales), Kellermania (Kellermania yuccigena, Planistromataceae, Botryosphaeriales), Mastigosporium (Mastigosporium album, Helotiales), and Mycotribulus (Mycotribulus mirabilis, Agaricales). Authors interested in contributing accounts of individual genera to larger multi-authored papers to be published in IMA Fungus, should contact the associate editors listed below for the major groups of fungi on the List of Protected Generic Names for Fungi. International Mycological Association 2014-06-19 2014-06 /pmc/articles/PMC4107892/ /pubmed/25083414 http://dx.doi.org/10.5598/imafungus.2014.05.01.14 Text en © 2014 International Mycological Association http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights.
spellingShingle Article
Crous, Pedro W.
Giraldo, Alejandra
Hawksworth, David L.
Robert, Vincent
Kirk, Paul M.
Guarro, Josep
Robbertse, Barbara
Schoch, Conrad L.
Damm, Ulrike
Trakunyingcharoen, Thippawan
Groenewald, Johannes Z.
The Genera of Fungi: fixing the application of type species of generic names
title The Genera of Fungi: fixing the application of type species of generic names
title_full The Genera of Fungi: fixing the application of type species of generic names
title_fullStr The Genera of Fungi: fixing the application of type species of generic names
title_full_unstemmed The Genera of Fungi: fixing the application of type species of generic names
title_short The Genera of Fungi: fixing the application of type species of generic names
title_sort genera of fungi: fixing the application of type species of generic names
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4107892/
https://www.ncbi.nlm.nih.gov/pubmed/25083414
http://dx.doi.org/10.5598/imafungus.2014.05.01.14
work_keys_str_mv AT crouspedrow thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT giraldoalejandra thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT hawksworthdavidl thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT robertvincent thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT kirkpaulm thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT guarrojosep thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT robbertsebarbara thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT schochconradl thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT dammulrike thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT trakunyingcharoenthippawan thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT groenewaldjohannesz thegeneraoffungifixingtheapplicationoftypespeciesofgenericnames
AT crouspedrow generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT giraldoalejandra generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT hawksworthdavidl generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT robertvincent generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT kirkpaulm generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT guarrojosep generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT robbertsebarbara generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT schochconradl generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT dammulrike generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT trakunyingcharoenthippawan generaoffungifixingtheapplicationoftypespeciesofgenericnames
AT groenewaldjohannesz generaoffungifixingtheapplicationoftypespeciesofgenericnames