Cargando…

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

BACKGROUND: Alternative splicing (AS) significantly enhances transcriptome complexity. It is differentially regulated in a wide variety of cell types and plays a role in several cellular processes. Here we describe a detailed survey of alternative splicing in grape based on 124 SOLiD RNAseq analyses...

Descripción completa

Detalles Bibliográficos
Autores principales:	Vitulo, Nicola, Forcato, Claudio, Carpinelli, Elisa Corteggiani, Telatin, Andrea, Campagna, Davide, D'Angelo, Michela, Zimbello, Rosanna, Corso, Massimiliano, Vannozzi, Alessandro, Bonghi, Claudio, Lucchin, Margherita, Valle, Giorgio
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108029/ https://www.ncbi.nlm.nih.gov/pubmed/24739459 http://dx.doi.org/10.1186/1471-2229-14-99

Ejemplares similares

Comprehensive transcript profiling of two grapevine rootstock genotypes contrasting in drought susceptibility links the phenylpropanoid pathway to enhanced tolerance
por: Corso, Massimiliano, et al.
Publicado: (2015)

Transcriptional Characterization of a Widely-Used Grapevine Rootstock Genotype under Different Iron-Limited Conditions
por: Vannozzi, Alessandro, et al.
Publicado: (2017)

Grapevine Rootstocks Differentially Affect the Rate of Ripening and Modulate Auxin-Related Genes in Cabernet Sauvignon Berries
por: Corso, Massimiliano, et al.
Publicado: (2016)

Stochastic noise in splicing machinery
por: Melamud, Eugene, et al.
Publicado: (2009)

Grape berry ripening delay induced by a pre-véraison NAA treatment is paralleled by a shift in the expression pattern of auxin- and ethylene-related genes
por: Ziliotto, Fiorenza, et al.
Publicado: (2012)

DNAJC17 is localized in nuclear speckles and interacts with splicing machinery components
por: Pascarella, A., et al.
Publicado: (2018)

The leaf transcriptome of fennel (Foeniculum vulgare Mill.) enables characterization of the t-anethole pathway and the discovery of microsatellites and single-nucleotide variants
por: Palumbo, Fabio, et al.
Publicado: (2018)

Can the HIV-1 splicing machinery be targeted for drug discovery?
por: Dlamini, Zodwa, et al.
Publicado: (2017)

Dysregulation of the splicing machinery is directly associated to aggressiveness of prostate cancer
por: Jiménez-Vacas, Juan M., et al.
Publicado: (2020)

High-Throughput Sequencing of microRNAs in Glucocorticoid Sensitive Paediatric Inflammatory Bowel Disease Patients
por: De Iudicibus, Sara, et al.
Publicado: (2018)

Splicing Machinery is Dysregulated in Pituitary Neuroendocrine Tumors and is Associated with Aggressiveness Features
por: Vázquez-Borrego, Mari C., et al.
Publicado: (2019)

Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery
por: Vosseberg, Julian, et al.
Publicado: (2017)

Exploring the Crosstalk Between LMNA and Splicing Machinery Gene Mutations in Dilated Cardiomyopathy
por: Zahr, Hind C., et al.
Publicado: (2018)

Alternative Splicing Programs in Prostate Cancer
por: Sette, Claudio
Publicado: (2013)

Current insights and advances into plant male sterility: new precision breeding technology based on genome editing applications
por: Farinati, Silvia, et al.
Publicado: (2023)

Genomics of Flower Identity in Grapevine (Vitis vinifera L.)
por: Palumbo, Fabio, et al.
Publicado: (2019)

The Effect of Soil on the Biochemical Plasticity of Berry Skin in Two Italian Grapevine (V. vinifera L.) Cultivars
por: Perin, Corrado, et al.
Publicado: (2020)

The grapevine (Vitis vinifera L.) floral transcriptome in Pinot noir variety: identification of tissue-related gene networks and whorl-specific markers in pre- and post-anthesis phases
por: Vannozzi, Alessandro, et al.
Publicado: (2021)

Trends in Apomixis Research: The 10 Most Cited Research Articles Published in the Pregenomic and Genomic Eras
por: Palumbo, Fabio, et al.
Publicado: (2022)

Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery
por: Schwartz, Schraga, et al.
Publicado: (2009)

Splicing machinery dysregulation drives glioblastoma development/aggressiveness: oncogenic role of SRSF3
por: Fuentes-Fayos, Antonio C, et al.
Publicado: (2020)

Biology of the mRNA Splicing Machinery and Its Dysregulation in Cancer Providing Therapeutic Opportunities
por: Blijlevens, Maxime, et al.
Publicado: (2021)

The upstream 5′ splice site remains associated to the transcription machinery during intron synthesis
por: Leader, Yodfat, et al.
Publicado: (2021)

IARA: a complete and curated atlas of the biogenesis of spliceosome machinery during RNA splicing
por: Rodrigues, Kelren S, et al.
Publicado: (2023)

c-MYC empowers transcription and productive splicing of the oncogenic splicing factor Sam68 in cancer
por: Caggiano, Cinzia, et al.
Publicado: (2019)

Corrigendum to: Integrating Omics and Alternative Splicing Reveals Insights into Grape Response to High Temperature
por: Jiang, Jianfu, et al.
Publicado: (2022)

Phosphorylation-Mediated Regulation of Alternative Splicing in Cancer
por: Naro, Chiara, et al.
Publicado: (2013)

Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses
por: Vannozzi, Alessandro, et al.
Publicado: (2012)

Effect of RNA splicing machinery gene mutations on prognosis of patients with MDS: A meta-analysis
por: Wang, Xiaoxue, et al.
Publicado: (2019)

Modulation of the Host Nuclear Compartment by Trypanosoma cruzi Uncovers Effects on Host Transcription and Splicing Machinery
por: Gachet-Castro, Camila, et al.
Publicado: (2021)

Splicing machinery is impaired in rheumatoid arthritis, associated with disease activity and modulated by anti-TNF therapy
por: Ibáñez-Costa, Alejandro, et al.
Publicado: (2022)

Alternative Splicing: Role in Cancer Development and Progression
por: Sette, Claudio, et al.
Publicado: (2013)

Splicing and alternative splicing in rice and humans
por: E, Zhiguo, et al.
Publicado: (2013)

HIV-1: To Splice or Not to Splice, That Is the Question
por: Emery, Ann, et al.
Publicado: (2021)

An intronic mutation in Chd7 creates a cryptic splice site, causing aberrant splicing in a mouse model of CHARGE syndrome
por: Ogier, Jacqueline M., et al.
Publicado: (2018)

SATRAP: SOLiD Assembler TRAnslation Program
por: Campagna, Davide, et al.
Publicado: (2015)

Adipose tissue plasticity in pheochromocytoma patients suggests a role of the splicing machinery in human adipose browning
por: Castellá, Moisés, et al.
Publicado: (2023)

THU080 Splicing Machinery Dysregulation As A Source Of Novel Diagnostic, Prognostic And Therapeutic Targets In Craniopharyngiomas
por: Fuentes-Fayos, Antonio C, et al.
Publicado: (2023)

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts
por: Sorber, Katherine, et al.
Publicado: (2011)

Editorial: RNA Splicing and Backsplicing: Disease and Therapy
por: Asselta, Rosanna, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_4dkqc5rg3eld7u0a6a1snd4f22