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Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1
BACKGROUND: The genus Salmonella is Gram-negative which belongs to the family Enterobacteriaceae. In this study, we have sequenced the whole genome of the strain DMA-1, which was isolated from mouse stool sample and identified as Salmonella enterica subspecies salamae. RESULTS: The strain DMA-1 was...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108123/ https://www.ncbi.nlm.nih.gov/pubmed/24721679 http://dx.doi.org/10.1186/1757-4749-6-8 |
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author | Sathyabama, Sathyaseelan Kaur, Gurwinder Arora, Amit Verma, Sheenam Mubin, Nida Mayilraj, Shanmugam Agrewala, Javed N |
author_facet | Sathyabama, Sathyaseelan Kaur, Gurwinder Arora, Amit Verma, Sheenam Mubin, Nida Mayilraj, Shanmugam Agrewala, Javed N |
author_sort | Sathyabama, Sathyaseelan |
collection | PubMed |
description | BACKGROUND: The genus Salmonella is Gram-negative which belongs to the family Enterobacteriaceae. In this study, we have sequenced the whole genome of the strain DMA-1, which was isolated from mouse stool sample and identified as Salmonella enterica subspecies salamae. RESULTS: The strain DMA-1 was closely related at the 16S rRNA gene sequence level with the members of the genus Salmonella: Salmonella enterica subspecies salamae DSM 9220(T) (100%), followed by Salmonella enterica subspecies diarizonae (99.1%), Salmonella enterica subspecies enterica (99.0%) and Salmonella enterica subspecies indica (98.5%). We obtained the draft genome of S. enterica subspecies salamae strain DMA-1 with a size of 4,826,209 bp and mean G+C content of 52.0 mol%. CONCLUSIONS: We for the first time, sequenced the entire genome of the strain DMA-1 which was isolated from the mouse stool sample and identified it as Salmonella enterica, sub species salamae. Further, we subjected the whole genome sequencing data for annotation that revealed several genes responsible for the pathogenesis, virulence, defense, metabolism and other genomic features. |
format | Online Article Text |
id | pubmed-4108123 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-41081232014-07-24 Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 Sathyabama, Sathyaseelan Kaur, Gurwinder Arora, Amit Verma, Sheenam Mubin, Nida Mayilraj, Shanmugam Agrewala, Javed N Gut Pathog Genome Announcement BACKGROUND: The genus Salmonella is Gram-negative which belongs to the family Enterobacteriaceae. In this study, we have sequenced the whole genome of the strain DMA-1, which was isolated from mouse stool sample and identified as Salmonella enterica subspecies salamae. RESULTS: The strain DMA-1 was closely related at the 16S rRNA gene sequence level with the members of the genus Salmonella: Salmonella enterica subspecies salamae DSM 9220(T) (100%), followed by Salmonella enterica subspecies diarizonae (99.1%), Salmonella enterica subspecies enterica (99.0%) and Salmonella enterica subspecies indica (98.5%). We obtained the draft genome of S. enterica subspecies salamae strain DMA-1 with a size of 4,826,209 bp and mean G+C content of 52.0 mol%. CONCLUSIONS: We for the first time, sequenced the entire genome of the strain DMA-1 which was isolated from the mouse stool sample and identified it as Salmonella enterica, sub species salamae. Further, we subjected the whole genome sequencing data for annotation that revealed several genes responsible for the pathogenesis, virulence, defense, metabolism and other genomic features. BioMed Central 2014-04-11 /pmc/articles/PMC4108123/ /pubmed/24721679 http://dx.doi.org/10.1186/1757-4749-6-8 Text en Copyright © 2014 Sathyabama et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Genome Announcement Sathyabama, Sathyaseelan Kaur, Gurwinder Arora, Amit Verma, Sheenam Mubin, Nida Mayilraj, Shanmugam Agrewala, Javed N Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 |
title | Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 |
title_full | Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 |
title_fullStr | Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 |
title_full_unstemmed | Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 |
title_short | Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 |
title_sort | genome sequencing, annotation and analysis of salmonella enterica sub species salamae strain dma-1 |
topic | Genome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108123/ https://www.ncbi.nlm.nih.gov/pubmed/24721679 http://dx.doi.org/10.1186/1757-4749-6-8 |
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