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Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1

BACKGROUND: The genus Salmonella is Gram-negative which belongs to the family Enterobacteriaceae. In this study, we have sequenced the whole genome of the strain DMA-1, which was isolated from mouse stool sample and identified as Salmonella enterica subspecies salamae. RESULTS: The strain DMA-1 was...

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Autores principales: Sathyabama, Sathyaseelan, Kaur, Gurwinder, Arora, Amit, Verma, Sheenam, Mubin, Nida, Mayilraj, Shanmugam, Agrewala, Javed N
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108123/
https://www.ncbi.nlm.nih.gov/pubmed/24721679
http://dx.doi.org/10.1186/1757-4749-6-8
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author Sathyabama, Sathyaseelan
Kaur, Gurwinder
Arora, Amit
Verma, Sheenam
Mubin, Nida
Mayilraj, Shanmugam
Agrewala, Javed N
author_facet Sathyabama, Sathyaseelan
Kaur, Gurwinder
Arora, Amit
Verma, Sheenam
Mubin, Nida
Mayilraj, Shanmugam
Agrewala, Javed N
author_sort Sathyabama, Sathyaseelan
collection PubMed
description BACKGROUND: The genus Salmonella is Gram-negative which belongs to the family Enterobacteriaceae. In this study, we have sequenced the whole genome of the strain DMA-1, which was isolated from mouse stool sample and identified as Salmonella enterica subspecies salamae. RESULTS: The strain DMA-1 was closely related at the 16S rRNA gene sequence level with the members of the genus Salmonella: Salmonella enterica subspecies salamae DSM 9220(T) (100%), followed by Salmonella enterica subspecies diarizonae (99.1%), Salmonella enterica subspecies enterica (99.0%) and Salmonella enterica subspecies indica (98.5%). We obtained the draft genome of S. enterica subspecies salamae strain DMA-1 with a size of 4,826,209 bp and mean G+C content of 52.0 mol%. CONCLUSIONS: We for the first time, sequenced the entire genome of the strain DMA-1 which was isolated from the mouse stool sample and identified it as Salmonella enterica, sub species salamae. Further, we subjected the whole genome sequencing data for annotation that revealed several genes responsible for the pathogenesis, virulence, defense, metabolism and other genomic features.
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spelling pubmed-41081232014-07-24 Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1 Sathyabama, Sathyaseelan Kaur, Gurwinder Arora, Amit Verma, Sheenam Mubin, Nida Mayilraj, Shanmugam Agrewala, Javed N Gut Pathog Genome Announcement BACKGROUND: The genus Salmonella is Gram-negative which belongs to the family Enterobacteriaceae. In this study, we have sequenced the whole genome of the strain DMA-1, which was isolated from mouse stool sample and identified as Salmonella enterica subspecies salamae. RESULTS: The strain DMA-1 was closely related at the 16S rRNA gene sequence level with the members of the genus Salmonella: Salmonella enterica subspecies salamae DSM 9220(T) (100%), followed by Salmonella enterica subspecies diarizonae (99.1%), Salmonella enterica subspecies enterica (99.0%) and Salmonella enterica subspecies indica (98.5%). We obtained the draft genome of S. enterica subspecies salamae strain DMA-1 with a size of 4,826,209 bp and mean G+C content of 52.0 mol%. CONCLUSIONS: We for the first time, sequenced the entire genome of the strain DMA-1 which was isolated from the mouse stool sample and identified it as Salmonella enterica, sub species salamae. Further, we subjected the whole genome sequencing data for annotation that revealed several genes responsible for the pathogenesis, virulence, defense, metabolism and other genomic features. BioMed Central 2014-04-11 /pmc/articles/PMC4108123/ /pubmed/24721679 http://dx.doi.org/10.1186/1757-4749-6-8 Text en Copyright © 2014 Sathyabama et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Genome Announcement
Sathyabama, Sathyaseelan
Kaur, Gurwinder
Arora, Amit
Verma, Sheenam
Mubin, Nida
Mayilraj, Shanmugam
Agrewala, Javed N
Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1
title Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1
title_full Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1
title_fullStr Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1
title_full_unstemmed Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1
title_short Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1
title_sort genome sequencing, annotation and analysis of salmonella enterica sub species salamae strain dma-1
topic Genome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108123/
https://www.ncbi.nlm.nih.gov/pubmed/24721679
http://dx.doi.org/10.1186/1757-4749-6-8
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