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COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil
Sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene from adults of 22 Culex ( Culex ) species from Argentina and Brazil were employed to assess species identification and to test the usefulness of COI for barcoding using the best close match (BCM) algorithm. A pairwise Kimura tw...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Instituto Oswaldo Cruz, Ministério da Saúde
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109187/ https://www.ncbi.nlm.nih.gov/pubmed/24473810 http://dx.doi.org/10.1590/0074-0276130457 |
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author | Laurito, Magdalena de Oliveira, Tatiane MP Almirón, Walter Ricardo Sallum, Maria Anice Mureb |
author_facet | Laurito, Magdalena de Oliveira, Tatiane MP Almirón, Walter Ricardo Sallum, Maria Anice Mureb |
author_sort | Laurito, Magdalena |
collection | PubMed |
description | Sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene from adults of 22 Culex ( Culex ) species from Argentina and Brazil were employed to assess species identification and to test the usefulness of COI for barcoding using the best close match (BCM) algorithm. A pairwise Kimura two-parameter distance matrix including the mean intra and interspecific distances for 71 COI barcode sequences was constructed. Of the 12 COI lineages recovered in the Neighbour-joining topology, five confirmed recognised morphological species ( Cx. acharistus , Cx. chidesteri , Cx. dolosus , Cx. lygrus and Cx. saltanensis ) with intraspecific divergences lower than 1.75%. Cx. bilineatus is formally resurrected from the synonymy of Cx. dolosus . Cx. maxi , Cx. surinamensis and the Coronator group species included were clustered into an unresolved lineage. The intraspecific distance of Cx. pipiens (3%) was almost twice the interspecific between it and Cx. quinquefasciatus (1.6%). Regarding the BCM criteria, the COI barcode successfully identified 69% of all species. The rest of the sequences, approximately 10%, 18% and 3%, remained as ambiguously, mis and unidentified, respectively. The COI barcode does not contain enough information to distinguish Culex ( Cux. ) species. |
format | Online Article Text |
id | pubmed-4109187 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Instituto Oswaldo Cruz, Ministério da Saúde |
record_format | MEDLINE/PubMed |
spelling | pubmed-41091872014-07-24 COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil Laurito, Magdalena de Oliveira, Tatiane MP Almirón, Walter Ricardo Sallum, Maria Anice Mureb Mem Inst Oswaldo Cruz Articles Sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene from adults of 22 Culex ( Culex ) species from Argentina and Brazil were employed to assess species identification and to test the usefulness of COI for barcoding using the best close match (BCM) algorithm. A pairwise Kimura two-parameter distance matrix including the mean intra and interspecific distances for 71 COI barcode sequences was constructed. Of the 12 COI lineages recovered in the Neighbour-joining topology, five confirmed recognised morphological species ( Cx. acharistus , Cx. chidesteri , Cx. dolosus , Cx. lygrus and Cx. saltanensis ) with intraspecific divergences lower than 1.75%. Cx. bilineatus is formally resurrected from the synonymy of Cx. dolosus . Cx. maxi , Cx. surinamensis and the Coronator group species included were clustered into an unresolved lineage. The intraspecific distance of Cx. pipiens (3%) was almost twice the interspecific between it and Cx. quinquefasciatus (1.6%). Regarding the BCM criteria, the COI barcode successfully identified 69% of all species. The rest of the sequences, approximately 10%, 18% and 3%, remained as ambiguously, mis and unidentified, respectively. The COI barcode does not contain enough information to distinguish Culex ( Cux. ) species. Instituto Oswaldo Cruz, Ministério da Saúde 2013-12 /pmc/articles/PMC4109187/ /pubmed/24473810 http://dx.doi.org/10.1590/0074-0276130457 Text en http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Laurito, Magdalena de Oliveira, Tatiane MP Almirón, Walter Ricardo Sallum, Maria Anice Mureb COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil |
title | COI barcode versus morphological identification of Culex
( Culex ) (Diptera: Culicidae) species: a case study using samples
from Argentina and Brazil |
title_full | COI barcode versus morphological identification of Culex
( Culex ) (Diptera: Culicidae) species: a case study using samples
from Argentina and Brazil |
title_fullStr | COI barcode versus morphological identification of Culex
( Culex ) (Diptera: Culicidae) species: a case study using samples
from Argentina and Brazil |
title_full_unstemmed | COI barcode versus morphological identification of Culex
( Culex ) (Diptera: Culicidae) species: a case study using samples
from Argentina and Brazil |
title_short | COI barcode versus morphological identification of Culex
( Culex ) (Diptera: Culicidae) species: a case study using samples
from Argentina and Brazil |
title_sort | coi barcode versus morphological identification of culex
( culex ) (diptera: culicidae) species: a case study using samples
from argentina and brazil |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109187/ https://www.ncbi.nlm.nih.gov/pubmed/24473810 http://dx.doi.org/10.1590/0074-0276130457 |
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