Cargando…

COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil

Sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene from adults of 22 Culex ( Culex ) species from Argentina and Brazil were employed to assess species identification and to test the usefulness of COI for barcoding using the best close match (BCM) algorithm. A pairwise Kimura tw...

Descripción completa

Detalles Bibliográficos
Autores principales: Laurito, Magdalena, de Oliveira, Tatiane MP, Almirón, Walter Ricardo, Sallum, Maria Anice Mureb
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Instituto Oswaldo Cruz, Ministério da Saúde 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109187/
https://www.ncbi.nlm.nih.gov/pubmed/24473810
http://dx.doi.org/10.1590/0074-0276130457
_version_ 1782327846566363136
author Laurito, Magdalena
de Oliveira, Tatiane MP
Almirón, Walter Ricardo
Sallum, Maria Anice Mureb
author_facet Laurito, Magdalena
de Oliveira, Tatiane MP
Almirón, Walter Ricardo
Sallum, Maria Anice Mureb
author_sort Laurito, Magdalena
collection PubMed
description Sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene from adults of 22 Culex ( Culex ) species from Argentina and Brazil were employed to assess species identification and to test the usefulness of COI for barcoding using the best close match (BCM) algorithm. A pairwise Kimura two-parameter distance matrix including the mean intra and interspecific distances for 71 COI barcode sequences was constructed. Of the 12 COI lineages recovered in the Neighbour-joining topology, five confirmed recognised morphological species ( Cx. acharistus , Cx. chidesteri , Cx. dolosus , Cx. lygrus and Cx. saltanensis ) with intraspecific divergences lower than 1.75%. Cx. bilineatus is formally resurrected from the synonymy of Cx. dolosus . Cx. maxi , Cx. surinamensis and the Coronator group species included were clustered into an unresolved lineage. The intraspecific distance of Cx. pipiens (3%) was almost twice the interspecific between it and Cx. quinquefasciatus (1.6%). Regarding the BCM criteria, the COI barcode successfully identified 69% of all species. The rest of the sequences, approximately 10%, 18% and 3%, remained as ambiguously, mis and unidentified, respectively. The COI barcode does not contain enough information to distinguish Culex ( Cux. ) species.
format Online
Article
Text
id pubmed-4109187
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Instituto Oswaldo Cruz, Ministério da Saúde
record_format MEDLINE/PubMed
spelling pubmed-41091872014-07-24 COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil Laurito, Magdalena de Oliveira, Tatiane MP Almirón, Walter Ricardo Sallum, Maria Anice Mureb Mem Inst Oswaldo Cruz Articles Sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene from adults of 22 Culex ( Culex ) species from Argentina and Brazil were employed to assess species identification and to test the usefulness of COI for barcoding using the best close match (BCM) algorithm. A pairwise Kimura two-parameter distance matrix including the mean intra and interspecific distances for 71 COI barcode sequences was constructed. Of the 12 COI lineages recovered in the Neighbour-joining topology, five confirmed recognised morphological species ( Cx. acharistus , Cx. chidesteri , Cx. dolosus , Cx. lygrus and Cx. saltanensis ) with intraspecific divergences lower than 1.75%. Cx. bilineatus is formally resurrected from the synonymy of Cx. dolosus . Cx. maxi , Cx. surinamensis and the Coronator group species included were clustered into an unresolved lineage. The intraspecific distance of Cx. pipiens (3%) was almost twice the interspecific between it and Cx. quinquefasciatus (1.6%). Regarding the BCM criteria, the COI barcode successfully identified 69% of all species. The rest of the sequences, approximately 10%, 18% and 3%, remained as ambiguously, mis and unidentified, respectively. The COI barcode does not contain enough information to distinguish Culex ( Cux. ) species. Instituto Oswaldo Cruz, Ministério da Saúde 2013-12 /pmc/articles/PMC4109187/ /pubmed/24473810 http://dx.doi.org/10.1590/0074-0276130457 Text en http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Laurito, Magdalena
de Oliveira, Tatiane MP
Almirón, Walter Ricardo
Sallum, Maria Anice Mureb
COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil
title COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil
title_full COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil
title_fullStr COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil
title_full_unstemmed COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil
title_short COI barcode versus morphological identification of Culex ( Culex ) (Diptera: Culicidae) species: a case study using samples from Argentina and Brazil
title_sort coi barcode versus morphological identification of culex ( culex ) (diptera: culicidae) species: a case study using samples from argentina and brazil
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109187/
https://www.ncbi.nlm.nih.gov/pubmed/24473810
http://dx.doi.org/10.1590/0074-0276130457
work_keys_str_mv AT lauritomagdalena coibarcodeversusmorphologicalidentificationofculexculexdipteraculicidaespeciesacasestudyusingsamplesfromargentinaandbrazil
AT deoliveiratatianemp coibarcodeversusmorphologicalidentificationofculexculexdipteraculicidaespeciesacasestudyusingsamplesfromargentinaandbrazil
AT almironwalterricardo coibarcodeversusmorphologicalidentificationofculexculexdipteraculicidaespeciesacasestudyusingsamplesfromargentinaandbrazil
AT sallummariaanicemureb coibarcodeversusmorphologicalidentificationofculexculexdipteraculicidaespeciesacasestudyusingsamplesfromargentinaandbrazil