Cargando…

PANET: A GPU-Based Tool for Fast Parallel Analysis of Robustness Dynamics and Feed-Forward/Feedback Loop Structures in Large-Scale Biological Networks

It has been a challenge in systems biology to unravel relationships between structural properties and dynamic behaviors of biological networks. A Cytoscape plugin named NetDS was recently proposed to analyze the robustness-related dynamics and feed-forward/feedback loop structures of biological netw...

Descripción completa

Detalles Bibliográficos
Autores principales:	Trinh, Hung-Cuong, Le, Duc-Hau, Kwon, Yung-Keun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109960/ https://www.ncbi.nlm.nih.gov/pubmed/25058310 http://dx.doi.org/10.1371/journal.pone.0103010

Ejemplares similares

Analysis of feedback loops and robustness in network evolution based on Boolean models
por: Kwon, Yung-Keun, et al.
Publicado: (2007)

The role of feed-forward and feedback processes for closed-loop prosthesis control
por: Saunders, Ian, et al.
Publicado: (2011)

Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease
por: Shamonin, Denis P., et al.
Publicado: (2014)

A fast robust optimizer for intensity modulated proton therapy using GPU
por: Xu, Yao, et al.
Publicado: (2020)

GPU based parallel acceleration for fast C-arm cone-beam CT reconstruction
por: Chen, Ken, et al.
Publicado: (2018)

Real-Time Feed-Forward/Feedback Required
por: Steinhagen, Ralph J
Publicado: (2006)

Optimized fast GPU implementation of robust artificial-neural-networks for k-space interpolation (RAKI) reconstruction
por: Zhang, Chi, et al.
Publicado: (2019)

A sample implementation for parallelizing Divide-and-Conquer algorithms on the GPU
por: Mei, Gang, et al.
Publicado: (2018)

eccCL: parallelized GPU implementation of Ensemble Classifier Chains
por: Riemenschneider, Mona, et al.
Publicado: (2017)

Efficient CT Image Reconstruction in a GPU Parallel Environment
por: Valencia Pérez, Tomás A., et al.
Publicado: (2020)

Properties of Boolean dynamics by node classification using feedback loops in a network
por: Kwon, Yung-Keun
Publicado: (2016)

Vibrational resonance in feed-forward-loop neuronal network motifs
por: Calim, Ali, et al.
Publicado: (2015)

RMut: R package for a Boolean sensitivity analysis against various types of mutations
por: Trinh, Hung-Cuong, et al.
Publicado: (2019)

A novel constrained genetic algorithm-based Boolean network inference method from steady-state gene expression data
por: Trinh, Hung-Cuong, et al.
Publicado: (2021)

wenda_gpu: fast domain adaptation for genomic data
por: Hippen, Ariel A, et al.
Publicado: (2022)

Highly-parallelized simulation of a pixelated LArTPC on a GPU
por: Abed Abud, Adam, et al.
Publicado: (2022)

Parallel, distributed and GPU computing technologies in single-particle electron microscopy
por: Schmeisser, Martin, et al.
Publicado: (2009)

Efficient Parallel Implementation of Active Appearance Model Fitting Algorithm on GPU
por: Wang, Jinwei, et al.
Publicado: (2014)

Efficient Parallel Video Processing Techniques on GPU: From Framework to Implementation
por: Su, Huayou, et al.
Publicado: (2014)

Parallel Optimization of 3D Cardiac Electrophysiological Model Using GPU
por: Xia, Yong, et al.
Publicado: (2015)

MIMO Radar Parallel Simulation System Based on CPU/GPU Architecture
por: Liu, Gaogao, et al.
Publicado: (2022)

The Benefit of Combining Neuronal Feedback and Feed-Forward Control for Robustness in Step Down Perturbations of Simulated Human Walking Depends on the Muscle Function
por: Haeufle, Daniel F. B., et al.
Publicado: (2018)

Feed-Forward versus Feedback Inhibition in a Basic Olfactory Circuit
por: Kee, Tiffany, et al.
Publicado: (2015)

Feed-forward and feedback projections of midbrain reticular formation neurons in the cat
por: Perkins, Eddie, et al.
Publicado: (2014)

Towards a robust phase locked loop tune feedback system
por: Jones, R, et al.
Publicado: (2005)

Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation
por: Csikász-Nagy, Attila, et al.
Publicado: (2009)

Specialized or flexible feed-forward loop motifs: a question of topology
por: Macía, Javier, et al.
Publicado: (2009)

Implications of the HDAC6-ERK1 feed-forward loop in immunotherapy
por: Wu, Jheng-Yu, et al.
Publicado: (2018)

Large-Scale Functional Analysis of CRP-Mediated Feed-Forward Loops
por: Yang, Chi-Dung, et al.
Publicado: (2018)

Detection of persistent signals and its relation to coherent feed-forward loops
por: Chou, Chun Tung
Publicado: (2018)

Crosstalk and the Dynamical Modularity of Feed-Forward Loops in Transcriptional Regulatory Networks
por: Rowland, Michael A., et al.
Publicado: (2017)

Switching fatty acid metabolism by an RNA-controlled feed forward loop
por: Huber, Michaela, et al.
Publicado: (2020)

Generation of Realistic Gene Regulatory Networks by Enriching for Feed-Forward Loops
por: Zhivkoplias, Erik K., et al.
Publicado: (2022)

Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
por: Dey, Anupam, et al.
Publicado: (2017)

Ultra-Fast Image Reconstruction of Tomosynthesis Mammography Using GPU
por: Arefan, D., et al.
Publicado: (2015)

Massive Exploration of Perturbed Conditions of the Blood Coagulation Cascade through GPU Parallelization
por: Cazzaniga, Paolo, et al.
Publicado: (2014)

Dynamic parallelism for synaptic updating in GPU-accelerated spiking neural network simulations
por: Kasap, Bahadir, et al.
Publicado: (2018)

Digital blood in massively parallel CPU/GPU systems for the study of platelet transport
por: Kotsalos, Christos, et al.
Publicado: (2021)

A GPU-Parallel Image Coregistration Algorithm for InSar Processing at the Edge
por: Romano, Diego, et al.
Publicado: (2021)

FastGCN: A GPU Accelerated Tool for Fast Gene Co-Expression Networks
por: Liang, Meimei, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_ocdmpu790d1e3nb5b9fsrinqcp