Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus

In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%–100% nt similarity to t...

Descripción completa

Detalles Bibliográficos
Autores principales: Marthaler, Douglas, Raymond, Lindsey, Jiang, Yin, Collins, James, Rossow, Kurt, Rovira, Albert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Centers for Disease Control and Prevention 2014
Materias:
Dispatch
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111195/
https://www.ncbi.nlm.nih.gov/pubmed/25075556
http://dx.doi.org/10.3201/eid2008.140526
_version_ 1782328080168124416
author Marthaler, Douglas
Raymond, Lindsey
Jiang, Yin
Collins, James
Rossow, Kurt
Rovira, Albert
author_facet Marthaler, Douglas
Raymond, Lindsey
Jiang, Yin
Collins, James
Rossow, Kurt
Rovira, Albert
author_sort Marthaler, Douglas
collection PubMed
description In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%–100% nt similarity to the other US PDCoV strains.
format Online
Article
Text
id pubmed-4111195
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Centers for Disease Control and Prevention
record_format MEDLINE/PubMed
spelling pubmed-41111952014-08-05 Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus Marthaler, Douglas Raymond, Lindsey Jiang, Yin Collins, James Rossow, Kurt Rovira, Albert Emerg Infect Dis Dispatch In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%–100% nt similarity to the other US PDCoV strains. Centers for Disease Control and Prevention 2014-08 /pmc/articles/PMC4111195/ /pubmed/25075556 http://dx.doi.org/10.3201/eid2008.140526 Text en https://creativecommons.org/licenses/by/4.0/This is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.
spellingShingle Dispatch
Marthaler, Douglas
Raymond, Lindsey
Jiang, Yin
Collins, James
Rossow, Kurt
Rovira, Albert
Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus
title Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus
title_full Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus
title_fullStr Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus
title_full_unstemmed Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus
title_short Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus
title_sort rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus
topic Dispatch
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111195/
https://www.ncbi.nlm.nih.gov/pubmed/25075556
http://dx.doi.org/10.3201/eid2008.140526
work_keys_str_mv AT marthalerdouglas rapiddetectioncompletegenomesequencingandphylogeneticanalysisofporcinedeltacoronavirus
AT raymondlindsey rapiddetectioncompletegenomesequencingandphylogeneticanalysisofporcinedeltacoronavirus
AT jiangyin rapiddetectioncompletegenomesequencingandphylogeneticanalysisofporcinedeltacoronavirus
AT collinsjames rapiddetectioncompletegenomesequencingandphylogeneticanalysisofporcinedeltacoronavirus
AT rossowkurt rapiddetectioncompletegenomesequencingandphylogeneticanalysisofporcinedeltacoronavirus
AT roviraalbert rapiddetectioncompletegenomesequencingandphylogeneticanalysisofporcinedeltacoronavirus

Ejemplares similares