JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

JAGuaR is an alignment protocol for RNA-seq reads that uses an extended reference to increase alignment sensitivity. It uses BWA to align reads to the genome and reference transcript models (including annotated exon-exon junctions) specifically allowing for the possibility of a single read spanning...

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Detalles Bibliográficos
Autores principales: Butterfield, Yaron S., Kreitzman, Maayan, Thiessen, Nina, Corbett, Richard D., Li, Yisu, Pang, Johnson, Ma, Yussanne P., Jones, Steven J. M., Birol, İnanç
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111418/
https://www.ncbi.nlm.nih.gov/pubmed/25062255
http://dx.doi.org/10.1371/journal.pone.0102398

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111418/
https://www.ncbi.nlm.nih.gov/pubmed/25062255
http://dx.doi.org/10.1371/journal.pone.0102398

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