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JAGuaR: Junction Alignments to Genome for RNA-Seq Reads
JAGuaR is an alignment protocol for RNA-seq reads that uses an extended reference to increase alignment sensitivity. It uses BWA to align reads to the genome and reference transcript models (including annotated exon-exon junctions) specifically allowing for the possibility of a single read spanning...
Autores principales: | Butterfield, Yaron S., Kreitzman, Maayan, Thiessen, Nina, Corbett, Richard D., Li, Yisu, Pang, Johnson, Ma, Yussanne P., Jones, Steven J. M., Birol, İnanç |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111418/ https://www.ncbi.nlm.nih.gov/pubmed/25062255 http://dx.doi.org/10.1371/journal.pone.0102398 |
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