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Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast
Twelve plant species were collected from the east coast of Korea to identify culturable endophytes present in their roots. The fungal internal transcribe spacer (ITS) region (ITS1-5.8SrRNA-ITS2) was used as a DNA barcode for identification of fungi. A total of 194 fungal strains were identified and...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Korean Society of Mycology
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112224/ https://www.ncbi.nlm.nih.gov/pubmed/25071377 http://dx.doi.org/10.5941/MYCO.2014.42.2.100 |
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author | Kim, Hyun You, Young-Hyun Yoon, Hyeokjun Seo, Yeonggyo Kim, Ye-Eun Choo, Yeon-Sik Lee, In-Jung Shin, Jae-Ho Kim, Jong-Guk |
author_facet | Kim, Hyun You, Young-Hyun Yoon, Hyeokjun Seo, Yeonggyo Kim, Ye-Eun Choo, Yeon-Sik Lee, In-Jung Shin, Jae-Ho Kim, Jong-Guk |
author_sort | Kim, Hyun |
collection | PubMed |
description | Twelve plant species were collected from the east coast of Korea to identify culturable endophytes present in their roots. The fungal internal transcribe spacer (ITS) region (ITS1-5.8SrRNA-ITS2) was used as a DNA barcode for identification of fungi. A total of 194 fungal strains were identified and categorized into 31 genera. The genus Penicillium accounted for the largest number of strains, followed by the genus Aspergillus. Furthermore, using 5 statistical methods, the diversity indices of the fungi were calculated at the genus level. After comprehensive evaluation, the endophytic fungal group from Phragmites australis ranked highest in diversity analyses. Several strains responsible for plant growth and survival (Penicillium citrinum, P. funiculosum, P. janthinellum, P. restrictum, and P. simplicissimum), were also identified. This study provides basic data on the sheds light on the symbiotic relationship between coastal plants and fungi. |
format | Online Article Text |
id | pubmed-4112224 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | The Korean Society of Mycology |
record_format | MEDLINE/PubMed |
spelling | pubmed-41122242014-07-28 Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast Kim, Hyun You, Young-Hyun Yoon, Hyeokjun Seo, Yeonggyo Kim, Ye-Eun Choo, Yeon-Sik Lee, In-Jung Shin, Jae-Ho Kim, Jong-Guk Mycobiology Research Article Twelve plant species were collected from the east coast of Korea to identify culturable endophytes present in their roots. The fungal internal transcribe spacer (ITS) region (ITS1-5.8SrRNA-ITS2) was used as a DNA barcode for identification of fungi. A total of 194 fungal strains were identified and categorized into 31 genera. The genus Penicillium accounted for the largest number of strains, followed by the genus Aspergillus. Furthermore, using 5 statistical methods, the diversity indices of the fungi were calculated at the genus level. After comprehensive evaluation, the endophytic fungal group from Phragmites australis ranked highest in diversity analyses. Several strains responsible for plant growth and survival (Penicillium citrinum, P. funiculosum, P. janthinellum, P. restrictum, and P. simplicissimum), were also identified. This study provides basic data on the sheds light on the symbiotic relationship between coastal plants and fungi. The Korean Society of Mycology 2014-06 2014-06-30 /pmc/articles/PMC4112224/ /pubmed/25071377 http://dx.doi.org/10.5941/MYCO.2014.42.2.100 Text en © The Korean Society of Mycology http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Kim, Hyun You, Young-Hyun Yoon, Hyeokjun Seo, Yeonggyo Kim, Ye-Eun Choo, Yeon-Sik Lee, In-Jung Shin, Jae-Ho Kim, Jong-Guk Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast |
title | Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast |
title_full | Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast |
title_fullStr | Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast |
title_full_unstemmed | Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast |
title_short | Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast |
title_sort | culturable fungal endophytes isolated from the roots of coastal plants inhabiting korean east coast |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112224/ https://www.ncbi.nlm.nih.gov/pubmed/25071377 http://dx.doi.org/10.5941/MYCO.2014.42.2.100 |
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