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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

The domestication of citrus, is poorly understood. Cultivated types are selections from, or hybrids of, wild progenitor species, whose identities and contributions remain controversial. By comparative analysis of a collection of citrus genomes, including a high quality haploid reference, we show tha...

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Autores principales: Wu, G. Albert, Prochnik, Simon, Jenkins, Jerry, Salse, Jerome, Hellsten, Uffe, Murat, Florent, Perrier, Xavier, Ruiz, Manuel, Scalabrin, Simone, Terol, Javier, Takita, Marco Aurélio, Labadie, Karine, Poulain, Julie, Couloux, Arnaud, Jabbari, Kamel, Cattonaro, Federica, Del Fabbro, Cristian, Pinosio, Sara, Zuccolo, Andrea, Chapman, Jarrod, Grimwood, Jane, Tadeo, Francisco R., Estornell, Leandro H., Muñoz-Sanz, Juan V., Ibanez, Victoria, Herrero-Ortega, Amparo, Aleza, Pablo, Pérez-Pérez, Julián, Ramón, Daniel, Brunel, Dominique, Luro, François, Chen, Chunxian, Farmerie, William G., Desany, Brian, Kodira, Chinnappa, Mohiuddin, Mohammed, Harkins, Tim, Fredrikson, Karin, Burns, Paul, Lomsadze, Alexandre, Borodovsky, Mark, Reforgiato, Giuseppe, Freitas-Astúa, Juliana, Quetier, Francis, Navarro, Luis, Roose, Mikeal, Wincker, Patrick, Schmutz, Jeremy, Morgante, Michele, Machado, Marcos Antonio, Talon, Manuel, Jaillon, Olivier, Ollitrault, Patrick, Gmitter, Frederick, Rokhsar, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4113729/
https://www.ncbi.nlm.nih.gov/pubmed/24908277
http://dx.doi.org/10.1038/nbt.2906
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author Wu, G. Albert
Prochnik, Simon
Jenkins, Jerry
Salse, Jerome
Hellsten, Uffe
Murat, Florent
Perrier, Xavier
Ruiz, Manuel
Scalabrin, Simone
Terol, Javier
Takita, Marco Aurélio
Labadie, Karine
Poulain, Julie
Couloux, Arnaud
Jabbari, Kamel
Cattonaro, Federica
Del Fabbro, Cristian
Pinosio, Sara
Zuccolo, Andrea
Chapman, Jarrod
Grimwood, Jane
Tadeo, Francisco R.
Estornell, Leandro H.
Muñoz-Sanz, Juan V.
Ibanez, Victoria
Herrero-Ortega, Amparo
Aleza, Pablo
Pérez-Pérez, Julián
Ramón, Daniel
Brunel, Dominique
Luro, François
Chen, Chunxian
Farmerie, William G.
Desany, Brian
Kodira, Chinnappa
Mohiuddin, Mohammed
Harkins, Tim
Fredrikson, Karin
Burns, Paul
Lomsadze, Alexandre
Borodovsky, Mark
Reforgiato, Giuseppe
Freitas-Astúa, Juliana
Quetier, Francis
Navarro, Luis
Roose, Mikeal
Wincker, Patrick
Schmutz, Jeremy
Morgante, Michele
Machado, Marcos Antonio
Talon, Manuel
Jaillon, Olivier
Ollitrault, Patrick
Gmitter, Frederick
Rokhsar, Daniel
author_facet Wu, G. Albert
Prochnik, Simon
Jenkins, Jerry
Salse, Jerome
Hellsten, Uffe
Murat, Florent
Perrier, Xavier
Ruiz, Manuel
Scalabrin, Simone
Terol, Javier
Takita, Marco Aurélio
Labadie, Karine
Poulain, Julie
Couloux, Arnaud
Jabbari, Kamel
Cattonaro, Federica
Del Fabbro, Cristian
Pinosio, Sara
Zuccolo, Andrea
Chapman, Jarrod
Grimwood, Jane
Tadeo, Francisco R.
Estornell, Leandro H.
Muñoz-Sanz, Juan V.
Ibanez, Victoria
Herrero-Ortega, Amparo
Aleza, Pablo
Pérez-Pérez, Julián
Ramón, Daniel
Brunel, Dominique
Luro, François
Chen, Chunxian
Farmerie, William G.
Desany, Brian
Kodira, Chinnappa
Mohiuddin, Mohammed
Harkins, Tim
Fredrikson, Karin
Burns, Paul
Lomsadze, Alexandre
Borodovsky, Mark
Reforgiato, Giuseppe
Freitas-Astúa, Juliana
Quetier, Francis
Navarro, Luis
Roose, Mikeal
Wincker, Patrick
Schmutz, Jeremy
Morgante, Michele
Machado, Marcos Antonio
Talon, Manuel
Jaillon, Olivier
Ollitrault, Patrick
Gmitter, Frederick
Rokhsar, Daniel
author_sort Wu, G. Albert
collection PubMed
description The domestication of citrus, is poorly understood. Cultivated types are selections from, or hybrids of, wild progenitor species, whose identities and contributions remain controversial. By comparative analysis of a collection of citrus genomes, including a high quality haploid reference, we show that cultivated types were derived from two progenitor species. Though cultivated pummelos represent selections from a single progenitor species, C. maxima, cultivated mandarins are introgressions of C. maxima into the ancestral mandarin species, C. reticulata. The most widely cultivated citrus, sweet orange, is the offspring of previously admixed individuals, but sour orange is an F1 hybrid of pure C. maxima and C. reticulata parents, implying that wild mandarins were part of the early breeding germplasm. A wild “mandarin” from China exhibited substantial divergence from C. reticulata, suggesting the possibility of other unrecognized wild citrus species. Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and enables sequence-directed genetic improvement.
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spelling pubmed-41137292015-01-01 Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication Wu, G. Albert Prochnik, Simon Jenkins, Jerry Salse, Jerome Hellsten, Uffe Murat, Florent Perrier, Xavier Ruiz, Manuel Scalabrin, Simone Terol, Javier Takita, Marco Aurélio Labadie, Karine Poulain, Julie Couloux, Arnaud Jabbari, Kamel Cattonaro, Federica Del Fabbro, Cristian Pinosio, Sara Zuccolo, Andrea Chapman, Jarrod Grimwood, Jane Tadeo, Francisco R. Estornell, Leandro H. Muñoz-Sanz, Juan V. Ibanez, Victoria Herrero-Ortega, Amparo Aleza, Pablo Pérez-Pérez, Julián Ramón, Daniel Brunel, Dominique Luro, François Chen, Chunxian Farmerie, William G. Desany, Brian Kodira, Chinnappa Mohiuddin, Mohammed Harkins, Tim Fredrikson, Karin Burns, Paul Lomsadze, Alexandre Borodovsky, Mark Reforgiato, Giuseppe Freitas-Astúa, Juliana Quetier, Francis Navarro, Luis Roose, Mikeal Wincker, Patrick Schmutz, Jeremy Morgante, Michele Machado, Marcos Antonio Talon, Manuel Jaillon, Olivier Ollitrault, Patrick Gmitter, Frederick Rokhsar, Daniel Nat Biotechnol Article The domestication of citrus, is poorly understood. Cultivated types are selections from, or hybrids of, wild progenitor species, whose identities and contributions remain controversial. By comparative analysis of a collection of citrus genomes, including a high quality haploid reference, we show that cultivated types were derived from two progenitor species. Though cultivated pummelos represent selections from a single progenitor species, C. maxima, cultivated mandarins are introgressions of C. maxima into the ancestral mandarin species, C. reticulata. The most widely cultivated citrus, sweet orange, is the offspring of previously admixed individuals, but sour orange is an F1 hybrid of pure C. maxima and C. reticulata parents, implying that wild mandarins were part of the early breeding germplasm. A wild “mandarin” from China exhibited substantial divergence from C. reticulata, suggesting the possibility of other unrecognized wild citrus species. Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and enables sequence-directed genetic improvement. 2014-06-08 2014-07 /pmc/articles/PMC4113729/ /pubmed/24908277 http://dx.doi.org/10.1038/nbt.2906 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Wu, G. Albert
Prochnik, Simon
Jenkins, Jerry
Salse, Jerome
Hellsten, Uffe
Murat, Florent
Perrier, Xavier
Ruiz, Manuel
Scalabrin, Simone
Terol, Javier
Takita, Marco Aurélio
Labadie, Karine
Poulain, Julie
Couloux, Arnaud
Jabbari, Kamel
Cattonaro, Federica
Del Fabbro, Cristian
Pinosio, Sara
Zuccolo, Andrea
Chapman, Jarrod
Grimwood, Jane
Tadeo, Francisco R.
Estornell, Leandro H.
Muñoz-Sanz, Juan V.
Ibanez, Victoria
Herrero-Ortega, Amparo
Aleza, Pablo
Pérez-Pérez, Julián
Ramón, Daniel
Brunel, Dominique
Luro, François
Chen, Chunxian
Farmerie, William G.
Desany, Brian
Kodira, Chinnappa
Mohiuddin, Mohammed
Harkins, Tim
Fredrikson, Karin
Burns, Paul
Lomsadze, Alexandre
Borodovsky, Mark
Reforgiato, Giuseppe
Freitas-Astúa, Juliana
Quetier, Francis
Navarro, Luis
Roose, Mikeal
Wincker, Patrick
Schmutz, Jeremy
Morgante, Michele
Machado, Marcos Antonio
Talon, Manuel
Jaillon, Olivier
Ollitrault, Patrick
Gmitter, Frederick
Rokhsar, Daniel
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
title Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
title_full Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
title_fullStr Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
title_full_unstemmed Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
title_short Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
title_sort sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4113729/
https://www.ncbi.nlm.nih.gov/pubmed/24908277
http://dx.doi.org/10.1038/nbt.2906
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