Cargando…

Genome-wide mapping of the distribution of CarD, RNAP σ(A), and RNAP β on the Mycobacterium smegmatis chromosome using chromatin immunoprecipitation sequencing

CarD is an essential mycobacterial protein that binds the RNA polymerase (RNAP) and affects the transcriptional profile of Mycobacterium smegmatis and Mycobacterium tuberculosis [6]. We predicted that CarD was directly regulating RNAP function but our prior experiments had not determined at what sta...

Descripción completa

Detalles Bibliográficos
Autores principales:	Landick, Robert, Krek, Azra, Glickman, Michael S., Socci, Nicholas D., Stallings, Christina L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2014
Materias:	Data in Brief
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4115788/ https://www.ncbi.nlm.nih.gov/pubmed/25089258 http://dx.doi.org/10.1016/j.gdata.2014.05.012

Ejemplares similares

Regulation of Eukaryotic RNAPs Activities by Phosphorylation
por: González-Jiménez, Araceli, et al.
Publicado: (2021)

Nucleotide-induced asymmetry within ATPase activator ring drives σ54–RNAP interaction and ATP hydrolysis
por: Sysoeva, Tatyana A., et al.
Publicado: (2013)

ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions
por: Latif, Haythem, et al.
Publicado: (2018)

RNAP II CTD tyrosine 1 performs diverse functions in vertebrate cells
por: Hsin, Jing-Ping, et al.
Publicado: (2014)

Yeast mitochondrial RNAP conformational changes are regulated by interactions with the mitochondrial transcription factor
por: Drakulic, Srdja, et al.
Publicado: (2014)

RNAP-II Molecules Participate in the Anchoring of the ORC to rDNA Replication Origins
por: Mayan, Maria D.
Publicado: (2013)

Primary microRNA processing is functionally coupled to RNAP II transcription in vitro
por: Yin, Shanye, et al.
Publicado: (2015)

Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells
por: Mantsoki, Anna, et al.
Publicado: (2018)

Evolutionary Invariant of the Structure of DNA Double Helix in RNAP II Core Promoters
por: Melikhova, Anastasia V., et al.
Publicado: (2022)

TraR, a Homolog of a RNAP Secondary Channel Interactor, Modulates Transcription
por: Blankschien, Matthew D., et al.
Publicado: (2009)

The Non-Canonical CTD of RNAP-II Is Essential for Productive RNA Synthesis in Trypanosoma brucei
por: Das, Anish, et al.
Publicado: (2009)

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
por: L.B. Almeida, Bilena, et al.
Publicado: (2022)

A small molecule antagonist of SMN disrupts the interaction between SMN and RNAP II
por: Liu, Yanli, et al.
Publicado: (2022)

Mitochondrial Metabolism in the Spotlight: Maintaining Balanced RNAP III Activity Ensures Cellular Homeostasis
por: Szatkowska, Roza, et al.
Publicado: (2023)

Combined SPT and FCS methods reveal a mechanism of RNAP II oversampling in cell nuclei
por: Fournier, Marie, et al.
Publicado: (2023)

Towards T7 RNA polymerase (T7RNAP)-based expression system in yeast: challenges and opportunities
por: Sáez Moreno, David, et al.
Publicado: (2023)

Identification of tri-phosphatase activity in the biogenesis of retroviral microRNAs and RNAP III-generated shRNAs
por: Burke, James M., et al.
Publicado: (2014)

Pseudomonas aeruginosa SutA wedges RNAP lobe domain open to facilitate promoter DNA unwinding
por: He, Dingwei, et al.
Publicado: (2022)

Synthetic evolution of herbicide resistance using a T7 RNAP–based random DNA base editor
por: Butt, Haroon, et al.
Publicado: (2022)

Why Are tRNAs Overproduced in the Absence of Maf1, a Negative Regulator of RNAP III, Not Fully Functional?
por: Boguta, Magdalena
Publicado: (2015)

Dynamic nucleoplasmic and nucleolar localization of mammalian RNase H1 in response to RNAP I transcriptional R-loops
por: Shen, Wen, et al.
Publicado: (2017)

Plasmid replication based on the T7 origin of replication requires a T7 RNAP variant and inactivation of ribonuclease H
por: Becker, Katja, et al.
Publicado: (2021)

Engineering of Bacillus Promoters Based on Interacting Motifs between UP Elements and RNA Polymerase (RNAP) α-Subunit
por: Li, Youran, et al.
Publicado: (2022)

mRNA produced by VSW-3 RNAP has high-level translation efficiency with low inflammatory stimulation
por: Wang, Guoquan, et al.
Publicado: (2022)

The Initiation Factor TFE and the Elongation Factor Spt4/5 Compete for the RNAP Clamp during Transcription Initiation and Elongation
por: Grohmann, Dina, et al.
Publicado: (2011)

AF4 uses the SL1 components of RNAP1 machinery to initiate MLL fusion- and AEP-dependent transcription
por: Okuda, Hiroshi, et al.
Publicado: (2015)

Active RNAP pre-initiation sites are highly mutated by cytidine deaminases in yeast, with AID targeting small RNA genes
por: Taylor, Benjamin JM, et al.
Publicado: (2014)

A persistent RNA·DNA hybrid formed by transcription of the Friedreich ataxia triplet repeat in live bacteria, and by T7 RNAP in vitro
por: Grabczyk, Ed, et al.
Publicado: (2007)

Comparative genomics of cyclin-dependent kinases suggest co-evolution of the RNAP II C-terminal domain and CTD-directed CDKs
por: Guo, Zhenhua, et al.
Publicado: (2004)

TFIIH generates a six base-pair open complex during RNAP II transcription initiation and start-site scanning
por: Tomko, Eric J., et al.
Publicado: (2017)

p68/DdX5 Supports β-Catenin & RNAP II during Androgen Receptor Mediated Transcription in Prostate Cancer
por: Clark, Emma L., et al.
Publicado: (2013)

The Old and New Testaments of gene regulation: Evolution of multi-subunit RNA polymerases and co-evolution of eukaryote complexity with the RNAP II CTD
por: Burton, Zachary F
Publicado: (2014)

Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis
por: Peano, Clelia, et al.
Publicado: (2015)

Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins
por: Chi, Binkai, et al.
Publicado: (2018)

Chromosome Organization and Replisome Dynamics in Mycobacterium smegmatis
por: Santi, Isabella, et al.
Publicado: (2015)

RNAP II produces capped 18S and 25S ribosomal RNAs resistant to 5′-monophosphate dependent processive 5′ to 3′ exonuclease in polymerase switched Saccharomyces cerevisiae
por: Rocha, Miguel A., et al.
Publicado: (2022)

GANT-61 induces cell cycle resting and autophagy by down-regulating RNAP III signal pathway and tRNA-Gly-CCC synthesis to combate chondrosarcoma
por: Sun, Yifeng, et al.
Publicado: (2023)

Gene expression profiles of wild-type and isoniazid-resistant strains of Mycobacterium smegmatis
por: Padiadpu, Jyothi, et al.
Publicado: (2015)

Fast chromatin immunoprecipitation assay
por: Nelson, Joel D., et al.
Publicado: (2006)

Cooperative stabilization of Mycobacterium tuberculosis rrnAP3 promoter open complexes by RbpA and CarD
por: Rammohan, Jayan, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_c2g7e6aqp6u3rjmui0q9k40oh7