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The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling
Decision makers in epidemiology and other disciplines are faced with the daunting challenge of designing interventions that will be successful with high probability and robust against a multitude of uncertainties. To facilitate the decision making process in the context of a goal-oriented objective...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117517/ https://www.ncbi.nlm.nih.gov/pubmed/25078087 http://dx.doi.org/10.1371/journal.pone.0103467 |
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author | Klein, Daniel J. Baym, Michael Eckhoff, Philip |
author_facet | Klein, Daniel J. Baym, Michael Eckhoff, Philip |
author_sort | Klein, Daniel J. |
collection | PubMed |
description | Decision makers in epidemiology and other disciplines are faced with the daunting challenge of designing interventions that will be successful with high probability and robust against a multitude of uncertainties. To facilitate the decision making process in the context of a goal-oriented objective (e.g., eradicate polio by [Image: see text]), stochastic models can be used to map the probability of achieving the goal as a function of parameters. Each run of a stochastic model can be viewed as a Bernoulli trial in which “success” is returned if and only if the goal is achieved in simulation. However, each run can take a significant amount of time to complete, and many replicates are required to characterize each point in parameter space, so specialized algorithms are required to locate desirable interventions. To address this need, we present the Separatrix Algorithm, which strategically locates parameter combinations that are expected to achieve the goal with a user-specified probability of success (e.g. 95%). Technically, the algorithm iteratively combines density-corrected binary kernel regression with a novel information-gathering experiment design to produce results that are asymptotically correct and work well in practice. The Separatrix Algorithm is demonstrated on several test problems, and on a detailed individual-based simulation of malaria. |
format | Online Article Text |
id | pubmed-4117517 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41175172014-08-04 The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling Klein, Daniel J. Baym, Michael Eckhoff, Philip PLoS One Research Article Decision makers in epidemiology and other disciplines are faced with the daunting challenge of designing interventions that will be successful with high probability and robust against a multitude of uncertainties. To facilitate the decision making process in the context of a goal-oriented objective (e.g., eradicate polio by [Image: see text]), stochastic models can be used to map the probability of achieving the goal as a function of parameters. Each run of a stochastic model can be viewed as a Bernoulli trial in which “success” is returned if and only if the goal is achieved in simulation. However, each run can take a significant amount of time to complete, and many replicates are required to characterize each point in parameter space, so specialized algorithms are required to locate desirable interventions. To address this need, we present the Separatrix Algorithm, which strategically locates parameter combinations that are expected to achieve the goal with a user-specified probability of success (e.g. 95%). Technically, the algorithm iteratively combines density-corrected binary kernel regression with a novel information-gathering experiment design to produce results that are asymptotically correct and work well in practice. The Separatrix Algorithm is demonstrated on several test problems, and on a detailed individual-based simulation of malaria. Public Library of Science 2014-07-31 /pmc/articles/PMC4117517/ /pubmed/25078087 http://dx.doi.org/10.1371/journal.pone.0103467 Text en © 2014 Klein et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Klein, Daniel J. Baym, Michael Eckhoff, Philip The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling |
title | The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling |
title_full | The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling |
title_fullStr | The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling |
title_full_unstemmed | The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling |
title_short | The Separatrix Algorithm for Synthesis and Analysis of Stochastic Simulations with Applications in Disease Modeling |
title_sort | separatrix algorithm for synthesis and analysis of stochastic simulations with applications in disease modeling |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117517/ https://www.ncbi.nlm.nih.gov/pubmed/25078087 http://dx.doi.org/10.1371/journal.pone.0103467 |
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