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Dynamics and stability of polymorphic human telomeric G-quadruplex under tension

As critical DNA structures capping the human chromosome ends, the stability and structural polymorphism of human telomeric G-quadruplex (G4) have drawn increasing attention in recent years. This work characterizes the equilibrium transitions of single-molecule telomeric G4 at physiological K(+) conc...

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Autores principales: You, Huijuan, Zeng, Xiangjun, Xu, Yue, Lim, Ci Ji, Efremov, Artem K., Phan, Anh Tuân, Yan, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117794/
https://www.ncbi.nlm.nih.gov/pubmed/25013179
http://dx.doi.org/10.1093/nar/gku581
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author You, Huijuan
Zeng, Xiangjun
Xu, Yue
Lim, Ci Ji
Efremov, Artem K.
Phan, Anh Tuân
Yan, Jie
author_facet You, Huijuan
Zeng, Xiangjun
Xu, Yue
Lim, Ci Ji
Efremov, Artem K.
Phan, Anh Tuân
Yan, Jie
author_sort You, Huijuan
collection PubMed
description As critical DNA structures capping the human chromosome ends, the stability and structural polymorphism of human telomeric G-quadruplex (G4) have drawn increasing attention in recent years. This work characterizes the equilibrium transitions of single-molecule telomeric G4 at physiological K(+) concentration. We report three folded states of telomeric G4 with markedly different lifetime and mechanical stability. Our results show that the kinetically favored folding pathway is through a short-lived intermediate state to a longer-lived state. By examining the force dependence of transition rates, the force-dependent transition free energy landscape for this pathway is determined. In addition, an ultra-long-lived form of telomeric G4 structure with a much stronger mechanical stability is identified.
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spelling pubmed-41177942015-05-18 Dynamics and stability of polymorphic human telomeric G-quadruplex under tension You, Huijuan Zeng, Xiangjun Xu, Yue Lim, Ci Ji Efremov, Artem K. Phan, Anh Tuân Yan, Jie Nucleic Acids Res Structural Biology As critical DNA structures capping the human chromosome ends, the stability and structural polymorphism of human telomeric G-quadruplex (G4) have drawn increasing attention in recent years. This work characterizes the equilibrium transitions of single-molecule telomeric G4 at physiological K(+) concentration. We report three folded states of telomeric G4 with markedly different lifetime and mechanical stability. Our results show that the kinetically favored folding pathway is through a short-lived intermediate state to a longer-lived state. By examining the force dependence of transition rates, the force-dependent transition free energy landscape for this pathway is determined. In addition, an ultra-long-lived form of telomeric G4 structure with a much stronger mechanical stability is identified. Oxford University Press 2014-09-01 2014-07-10 /pmc/articles/PMC4117794/ /pubmed/25013179 http://dx.doi.org/10.1093/nar/gku581 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. >http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Structural Biology
You, Huijuan
Zeng, Xiangjun
Xu, Yue
Lim, Ci Ji
Efremov, Artem K.
Phan, Anh Tuân
Yan, Jie
Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
title Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
title_full Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
title_fullStr Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
title_full_unstemmed Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
title_short Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
title_sort dynamics and stability of polymorphic human telomeric g-quadruplex under tension
topic Structural Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117794/
https://www.ncbi.nlm.nih.gov/pubmed/25013179
http://dx.doi.org/10.1093/nar/gku581
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