Cargando…
Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
As critical DNA structures capping the human chromosome ends, the stability and structural polymorphism of human telomeric G-quadruplex (G4) have drawn increasing attention in recent years. This work characterizes the equilibrium transitions of single-molecule telomeric G4 at physiological K(+) conc...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117794/ https://www.ncbi.nlm.nih.gov/pubmed/25013179 http://dx.doi.org/10.1093/nar/gku581 |
_version_ | 1782328750799585280 |
---|---|
author | You, Huijuan Zeng, Xiangjun Xu, Yue Lim, Ci Ji Efremov, Artem K. Phan, Anh Tuân Yan, Jie |
author_facet | You, Huijuan Zeng, Xiangjun Xu, Yue Lim, Ci Ji Efremov, Artem K. Phan, Anh Tuân Yan, Jie |
author_sort | You, Huijuan |
collection | PubMed |
description | As critical DNA structures capping the human chromosome ends, the stability and structural polymorphism of human telomeric G-quadruplex (G4) have drawn increasing attention in recent years. This work characterizes the equilibrium transitions of single-molecule telomeric G4 at physiological K(+) concentration. We report three folded states of telomeric G4 with markedly different lifetime and mechanical stability. Our results show that the kinetically favored folding pathway is through a short-lived intermediate state to a longer-lived state. By examining the force dependence of transition rates, the force-dependent transition free energy landscape for this pathway is determined. In addition, an ultra-long-lived form of telomeric G4 structure with a much stronger mechanical stability is identified. |
format | Online Article Text |
id | pubmed-4117794 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-41177942015-05-18 Dynamics and stability of polymorphic human telomeric G-quadruplex under tension You, Huijuan Zeng, Xiangjun Xu, Yue Lim, Ci Ji Efremov, Artem K. Phan, Anh Tuân Yan, Jie Nucleic Acids Res Structural Biology As critical DNA structures capping the human chromosome ends, the stability and structural polymorphism of human telomeric G-quadruplex (G4) have drawn increasing attention in recent years. This work characterizes the equilibrium transitions of single-molecule telomeric G4 at physiological K(+) concentration. We report three folded states of telomeric G4 with markedly different lifetime and mechanical stability. Our results show that the kinetically favored folding pathway is through a short-lived intermediate state to a longer-lived state. By examining the force dependence of transition rates, the force-dependent transition free energy landscape for this pathway is determined. In addition, an ultra-long-lived form of telomeric G4 structure with a much stronger mechanical stability is identified. Oxford University Press 2014-09-01 2014-07-10 /pmc/articles/PMC4117794/ /pubmed/25013179 http://dx.doi.org/10.1093/nar/gku581 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. >http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Structural Biology You, Huijuan Zeng, Xiangjun Xu, Yue Lim, Ci Ji Efremov, Artem K. Phan, Anh Tuân Yan, Jie Dynamics and stability of polymorphic human telomeric G-quadruplex under tension |
title | Dynamics and stability of polymorphic human telomeric G-quadruplex under tension |
title_full | Dynamics and stability of polymorphic human telomeric G-quadruplex under tension |
title_fullStr | Dynamics and stability of polymorphic human telomeric G-quadruplex under tension |
title_full_unstemmed | Dynamics and stability of polymorphic human telomeric G-quadruplex under tension |
title_short | Dynamics and stability of polymorphic human telomeric G-quadruplex under tension |
title_sort | dynamics and stability of polymorphic human telomeric g-quadruplex under tension |
topic | Structural Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117794/ https://www.ncbi.nlm.nih.gov/pubmed/25013179 http://dx.doi.org/10.1093/nar/gku581 |
work_keys_str_mv | AT youhuijuan dynamicsandstabilityofpolymorphichumantelomericgquadruplexundertension AT zengxiangjun dynamicsandstabilityofpolymorphichumantelomericgquadruplexundertension AT xuyue dynamicsandstabilityofpolymorphichumantelomericgquadruplexundertension AT limciji dynamicsandstabilityofpolymorphichumantelomericgquadruplexundertension AT efremovartemk dynamicsandstabilityofpolymorphichumantelomericgquadruplexundertension AT phananhtuan dynamicsandstabilityofpolymorphichumantelomericgquadruplexundertension AT yanjie dynamicsandstabilityofpolymorphichumantelomericgquadruplexundertension |