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A new method for constructing networks from binary data
Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118196/ https://www.ncbi.nlm.nih.gov/pubmed/25082149 http://dx.doi.org/10.1038/srep05918 |
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author | van Borkulo, Claudia D. Borsboom, Denny Epskamp, Sacha Blanken, Tessa F. Boschloo, Lynn Schoevers, Robert A. Waldorp, Lourens J. |
author_facet | van Borkulo, Claudia D. Borsboom, Denny Epskamp, Sacha Blanken, Tessa F. Boschloo, Lynn Schoevers, Robert A. Waldorp, Lourens J. |
author_sort | van Borkulo, Claudia D. |
collection | PubMed |
description | Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian data. In the present paper, we present a method for assessing network structures from binary data. Although models for binary data are infamous for their computational intractability, we present a computationally efficient model for estimating network structures. The approach, which is based on Ising models as used in physics, combines logistic regression with model selection based on a Goodness-of-Fit measure to identify relevant relationships between variables that define connections in a network. A validation study shows that this method succeeds in revealing the most relevant features of a network for realistic sample sizes. We apply our proposed method to estimate the network of depression and anxiety symptoms from symptom scores of 1108 subjects. Possible extensions of the model are discussed. |
format | Online Article Text |
id | pubmed-4118196 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-41181962014-08-15 A new method for constructing networks from binary data van Borkulo, Claudia D. Borsboom, Denny Epskamp, Sacha Blanken, Tessa F. Boschloo, Lynn Schoevers, Robert A. Waldorp, Lourens J. Sci Rep Article Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian data. In the present paper, we present a method for assessing network structures from binary data. Although models for binary data are infamous for their computational intractability, we present a computationally efficient model for estimating network structures. The approach, which is based on Ising models as used in physics, combines logistic regression with model selection based on a Goodness-of-Fit measure to identify relevant relationships between variables that define connections in a network. A validation study shows that this method succeeds in revealing the most relevant features of a network for realistic sample sizes. We apply our proposed method to estimate the network of depression and anxiety symptoms from symptom scores of 1108 subjects. Possible extensions of the model are discussed. Nature Publishing Group 2014-08-01 /pmc/articles/PMC4118196/ /pubmed/25082149 http://dx.doi.org/10.1038/srep05918 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/4.0/ |
spellingShingle | Article van Borkulo, Claudia D. Borsboom, Denny Epskamp, Sacha Blanken, Tessa F. Boschloo, Lynn Schoevers, Robert A. Waldorp, Lourens J. A new method for constructing networks from binary data |
title | A new method for constructing networks from binary data |
title_full | A new method for constructing networks from binary data |
title_fullStr | A new method for constructing networks from binary data |
title_full_unstemmed | A new method for constructing networks from binary data |
title_short | A new method for constructing networks from binary data |
title_sort | new method for constructing networks from binary data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118196/ https://www.ncbi.nlm.nih.gov/pubmed/25082149 http://dx.doi.org/10.1038/srep05918 |
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