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A new method for constructing networks from binary data

Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian...

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Detalles Bibliográficos
Autores principales: van Borkulo, Claudia D., Borsboom, Denny, Epskamp, Sacha, Blanken, Tessa F., Boschloo, Lynn, Schoevers, Robert A., Waldorp, Lourens J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118196/
https://www.ncbi.nlm.nih.gov/pubmed/25082149
http://dx.doi.org/10.1038/srep05918
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author van Borkulo, Claudia D.
Borsboom, Denny
Epskamp, Sacha
Blanken, Tessa F.
Boschloo, Lynn
Schoevers, Robert A.
Waldorp, Lourens J.
author_facet van Borkulo, Claudia D.
Borsboom, Denny
Epskamp, Sacha
Blanken, Tessa F.
Boschloo, Lynn
Schoevers, Robert A.
Waldorp, Lourens J.
author_sort van Borkulo, Claudia D.
collection PubMed
description Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian data. In the present paper, we present a method for assessing network structures from binary data. Although models for binary data are infamous for their computational intractability, we present a computationally efficient model for estimating network structures. The approach, which is based on Ising models as used in physics, combines logistic regression with model selection based on a Goodness-of-Fit measure to identify relevant relationships between variables that define connections in a network. A validation study shows that this method succeeds in revealing the most relevant features of a network for realistic sample sizes. We apply our proposed method to estimate the network of depression and anxiety symptoms from symptom scores of 1108 subjects. Possible extensions of the model are discussed.
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spelling pubmed-41181962014-08-15 A new method for constructing networks from binary data van Borkulo, Claudia D. Borsboom, Denny Epskamp, Sacha Blanken, Tessa F. Boschloo, Lynn Schoevers, Robert A. Waldorp, Lourens J. Sci Rep Article Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian data. In the present paper, we present a method for assessing network structures from binary data. Although models for binary data are infamous for their computational intractability, we present a computationally efficient model for estimating network structures. The approach, which is based on Ising models as used in physics, combines logistic regression with model selection based on a Goodness-of-Fit measure to identify relevant relationships between variables that define connections in a network. A validation study shows that this method succeeds in revealing the most relevant features of a network for realistic sample sizes. We apply our proposed method to estimate the network of depression and anxiety symptoms from symptom scores of 1108 subjects. Possible extensions of the model are discussed. Nature Publishing Group 2014-08-01 /pmc/articles/PMC4118196/ /pubmed/25082149 http://dx.doi.org/10.1038/srep05918 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/4.0/
spellingShingle Article
van Borkulo, Claudia D.
Borsboom, Denny
Epskamp, Sacha
Blanken, Tessa F.
Boschloo, Lynn
Schoevers, Robert A.
Waldorp, Lourens J.
A new method for constructing networks from binary data
title A new method for constructing networks from binary data
title_full A new method for constructing networks from binary data
title_fullStr A new method for constructing networks from binary data
title_full_unstemmed A new method for constructing networks from binary data
title_short A new method for constructing networks from binary data
title_sort new method for constructing networks from binary data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118196/
https://www.ncbi.nlm.nih.gov/pubmed/25082149
http://dx.doi.org/10.1038/srep05918
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