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Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1
Single-wavelength anomalous dispersion of S atoms (S-SAD) is an elegant phasing method to determine crystal structures that does not require heavy-atom incorporation or selenomethionine derivatization. Nevertheless, this technique has been limited by the paucity of the signal at the usual X-ray wave...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118829/ https://www.ncbi.nlm.nih.gov/pubmed/25084338 http://dx.doi.org/10.1107/S139900471401339X |
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author | El Omari, Kamel Iourin, Oleg Kadlec, Jan Fearn, Richard Hall, David R. Harlos, Karl Grimes, Jonathan M. Stuart, David I. |
author_facet | El Omari, Kamel Iourin, Oleg Kadlec, Jan Fearn, Richard Hall, David R. Harlos, Karl Grimes, Jonathan M. Stuart, David I. |
author_sort | El Omari, Kamel |
collection | PubMed |
description | Single-wavelength anomalous dispersion of S atoms (S-SAD) is an elegant phasing method to determine crystal structures that does not require heavy-atom incorporation or selenomethionine derivatization. Nevertheless, this technique has been limited by the paucity of the signal at the usual X-ray wavelengths, requiring very accurate measurement of the anomalous differences. Here, the data collection and structure solution of the N-terminal domain of the ectodomain of HCV E1 from crystals that diffracted very weakly is reported. By combining the data from 32 crystals, it was possible to solve the sulfur substructure and calculate initial maps at 7 Å resolution, and after density modication and phase extension using a higher resolution native data set to 3.5 Å resolution model building was achievable. |
format | Online Article Text |
id | pubmed-4118829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-41188292014-09-19 Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 El Omari, Kamel Iourin, Oleg Kadlec, Jan Fearn, Richard Hall, David R. Harlos, Karl Grimes, Jonathan M. Stuart, David I. Acta Crystallogr D Biol Crystallogr Research Papers Single-wavelength anomalous dispersion of S atoms (S-SAD) is an elegant phasing method to determine crystal structures that does not require heavy-atom incorporation or selenomethionine derivatization. Nevertheless, this technique has been limited by the paucity of the signal at the usual X-ray wavelengths, requiring very accurate measurement of the anomalous differences. Here, the data collection and structure solution of the N-terminal domain of the ectodomain of HCV E1 from crystals that diffracted very weakly is reported. By combining the data from 32 crystals, it was possible to solve the sulfur substructure and calculate initial maps at 7 Å resolution, and after density modication and phase extension using a higher resolution native data set to 3.5 Å resolution model building was achievable. International Union of Crystallography 2014-07-25 /pmc/articles/PMC4118829/ /pubmed/25084338 http://dx.doi.org/10.1107/S139900471401339X Text en © El Omari et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers El Omari, Kamel Iourin, Oleg Kadlec, Jan Fearn, Richard Hall, David R. Harlos, Karl Grimes, Jonathan M. Stuart, David I. Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 |
title | Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 |
title_full | Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 |
title_fullStr | Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 |
title_full_unstemmed | Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 |
title_short | Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 |
title_sort | pushing the limits of sulfur sad phasing: de novo structure solution of the n-terminal domain of the ectodomain of hcv e1 |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118829/ https://www.ncbi.nlm.nih.gov/pubmed/25084338 http://dx.doi.org/10.1107/S139900471401339X |
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