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Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1

Single-wavelength anomalous dispersion of S atoms (S-SAD) is an elegant phasing method to determine crystal structures that does not require heavy-atom incorporation or selenomethionine derivatization. Nevertheless, this technique has been limited by the paucity of the signal at the usual X-ray wave...

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Autores principales: El Omari, Kamel, Iourin, Oleg, Kadlec, Jan, Fearn, Richard, Hall, David R., Harlos, Karl, Grimes, Jonathan M., Stuart, David I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118829/
https://www.ncbi.nlm.nih.gov/pubmed/25084338
http://dx.doi.org/10.1107/S139900471401339X
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author El Omari, Kamel
Iourin, Oleg
Kadlec, Jan
Fearn, Richard
Hall, David R.
Harlos, Karl
Grimes, Jonathan M.
Stuart, David I.
author_facet El Omari, Kamel
Iourin, Oleg
Kadlec, Jan
Fearn, Richard
Hall, David R.
Harlos, Karl
Grimes, Jonathan M.
Stuart, David I.
author_sort El Omari, Kamel
collection PubMed
description Single-wavelength anomalous dispersion of S atoms (S-SAD) is an elegant phasing method to determine crystal structures that does not require heavy-atom incorporation or selenomethionine derivatization. Nevertheless, this technique has been limited by the paucity of the signal at the usual X-ray wavelengths, requiring very accurate measurement of the anomalous differences. Here, the data collection and structure solution of the N-terminal domain of the ectodomain of HCV E1 from crystals that diffracted very weakly is reported. By combining the data from 32 crystals, it was possible to solve the sulfur substructure and calculate initial maps at 7 Å resolution, and after density modication and phase extension using a higher resolution native data set to 3.5 Å resolution model building was achievable.
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spelling pubmed-41188292014-09-19 Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1 El Omari, Kamel Iourin, Oleg Kadlec, Jan Fearn, Richard Hall, David R. Harlos, Karl Grimes, Jonathan M. Stuart, David I. Acta Crystallogr D Biol Crystallogr Research Papers Single-wavelength anomalous dispersion of S atoms (S-SAD) is an elegant phasing method to determine crystal structures that does not require heavy-atom incorporation or selenomethionine derivatization. Nevertheless, this technique has been limited by the paucity of the signal at the usual X-ray wavelengths, requiring very accurate measurement of the anomalous differences. Here, the data collection and structure solution of the N-terminal domain of the ectodomain of HCV E1 from crystals that diffracted very weakly is reported. By combining the data from 32 crystals, it was possible to solve the sulfur substructure and calculate initial maps at 7 Å resolution, and after density modication and phase extension using a higher resolution native data set to 3.5 Å resolution model building was achievable. International Union of Crystallography 2014-07-25 /pmc/articles/PMC4118829/ /pubmed/25084338 http://dx.doi.org/10.1107/S139900471401339X Text en © El Omari et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
El Omari, Kamel
Iourin, Oleg
Kadlec, Jan
Fearn, Richard
Hall, David R.
Harlos, Karl
Grimes, Jonathan M.
Stuart, David I.
Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1
title Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1
title_full Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1
title_fullStr Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1
title_full_unstemmed Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1
title_short Pushing the limits of sulfur SAD phasing: de novo structure solution of the N-terminal domain of the ectodomain of HCV E1
title_sort pushing the limits of sulfur sad phasing: de novo structure solution of the n-terminal domain of the ectodomain of hcv e1
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118829/
https://www.ncbi.nlm.nih.gov/pubmed/25084338
http://dx.doi.org/10.1107/S139900471401339X
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