Cargando…

miRSeq: A User-Friendly Standalone Toolkit for Sequencing Quality Evaluation and miRNA Profiling

MicroRNAs (miRNAs) present diverse regulatory functions in a wide range of biological activities. Studies on miRNA functions generally depend on determining miRNA expression profiles between libraries by using a next-generation sequencing (NGS) platform. Currently, several online web services are de...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pan, Cheng-Tsung, Tsai, Kuo-Wang, Hung, Tzu-Min, Lin, Wei-Chen, Pan, Chao-Yu, Yu, Hong-Ren, Li, Sung-Chou
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119685/ https://www.ncbi.nlm.nih.gov/pubmed/25114903 http://dx.doi.org/10.1155/2014/462135

Ejemplares similares

CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data
por: Sun, Zhifu, et al.
Publicado: (2014)

miRspring: a compact standalone research tool for analyzing miRNA-seq data
por: Humphreys, David T., et al.
Publicado: (2013)

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing
por: Kalari, Krishna R, et al.
Publicado: (2014)

QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing
por: Zhao, Shanrong, et al.
Publicado: (2017)

VisRseq: R-based visual framework for analysis of sequencing data
por: Younesy, Hamid, et al.
Publicado: (2015)

mirPRo–a novel standalone program for differential expression and variation analysis of miRNAs
por: Shi, Jieming, et al.
Publicado: (2015)

miRNAs in the Beta Cell—Friends or Foes?
por: Karagiannopoulos, Alexandros, et al.
Publicado: (2023)

miRNA arm selection and isomiR distribution in gastric cancer
por: Li, Sung-Chou, et al.
Publicado: (2012)

Co-modulated behavior and effects of differentially expressed miRNA in colorectal cancer
por: Chen, Wei-Shone, et al.
Publicado: (2013)

Viruses and miRNAs: More Friends than Foes
por: Bruscella, Patrice, et al.
Publicado: (2017)

MVPANI: A Toolkit With Friendly Graphical User Interface for Multivariate Pattern Analysis of Neuroimaging Data
por: Peng, Yanmin, et al.
Publicado: (2020)

AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies
por: Hochrein, Lena, et al.
Publicado: (2017)

Tofu: a fast, versatile and user-friendly image processing toolkit for computed tomography
por: Faragó, Tomáš, et al.
Publicado: (2022)

Serum miRNA as a possible biomarker in the diagnosis of bipolar II disorder
por: Lee, Sheng-Yu, et al.
Publicado: (2020)

MiMiCPy: An Efficient Toolkit for MiMiC-Based QM/MM Simulations
por: Raghavan, Bharath, et al.
Publicado: (2023)

The Exploration of miRNAs From Porcine Fallopian Tube Stem Cells on Porcine Oocytes
por: Fu, Tzu-Yen, et al.
Publicado: (2022)

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database
por: Chou, Chih-Hung, et al.
Publicado: (2016)

Combination of Serum miRNAs with Serum Exosomal miRNAs in Early Diagnosis for Non-Small-Cell Lung Cancer
por: Wu, Qingwei, et al.
Publicado: (2020)

Broccoli Fluorets: Split Aptamers as a User-Friendly Fluorescent Toolkit for Dynamic RNA Nanotechnology
por: Chandler, Morgan, et al.
Publicado: (2018)

Integrative Analysis of miRNA-mRNA and miRNA-miRNA Interactions
por: Guo, Li, et al.
Publicado: (2014)

A genetic toolkit for tagging intronic MiMIC containing genes
por: Nagarkar-Jaiswal, Sonal, et al.
Publicado: (2015)

Discovery and characterization of medaka miRNA genes by next generation sequencing platform
por: Li, Sung-Chou, et al.
Publicado: (2010)

NmrLineGuru: Standalone and User-Friendly GUIs for Fast 1D NMR Lineshape Simulation and Analysis of Multi-State Equilibrium Binding Models
por: Feng, Chao, et al.
Publicado: (2019)

The Tumor Cytosol miRNAs, Fluid miRNAs, and Exosome miRNAs in Lung Cancer
por: Qin, Xin, et al.
Publicado: (2015)

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions
por: Hsu, Sheng-Da, et al.
Publicado: (2014)

miR‐AB, a miRNA‐based shRNA viral toolkit for multicolor‐barcoded multiplex RNAi at a single‐cell level
por: Wang, Dapeng, et al.
Publicado: (2022)

A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
por: Plaisier, Christopher L., et al.
Publicado: (2012)

Circulating miRNAs Act as Diagnostic Biomarkers for Bladder Cancer in Urine
por: Lin, Jen-Tai, et al.
Publicado: (2021)

RDX and miRNA Expression: Zhang and Pan Respond
por: Zhang, Baohong, et al.
Publicado: (2009)

Association of rs2910164 Polymorphism in miRNA-146 and rs3746444 Polymorphism in miRNA-499 with Inflammatory Arthritis: A Meta-Analysis
por: Wang, Dingjian, et al.
Publicado: (2019)

The Correlation between miRNA and Lymph Node Metastasis in Gastric Cancer
por: Huang, Kuo-Hung, et al.
Publicado: (2015)

Using miRNA-Analyzer for the Analysis of miRNA Data
por: Guzzi, Pietro Hiram, et al.
Publicado: (2016)

MiRNAs and miRNA Polymorphisms Modify Drug Response
por: Li, Mu-Peng, et al.
Publicado: (2016)

Deciphering miRNAs’ Action through miRNA Editing
por: Correia de Sousa, Marta, et al.
Publicado: (2019)

Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery
por: Li, Na, et al.
Publicado: (2013)

Gold Nanoconjugates for miRNA Modulation in Cancer Therapy: From miRNA Silencing to miRNA Mimics
por: Sousa, Diana P., et al.
Publicado: (2022)

Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis
por: Zhou, Jianping, et al.
Publicado: (2015)

miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels
por: Guo, Li, et al.
Publicado: (2016)

miRNA sensitivity to Drosha levels correlates with pre-miRNA secondary structure
por: Sperber, Henrik, et al.
Publicado: (2014)

The Role of miRNA in Tumor Immune Escape and miRNA-Based Therapeutic Strategies
por: Zhang, Zhengjia, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_qaktn0mpkc3sqpjkhs3b7eulac