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The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees
BACKGROUND: There is a need to evaluate complex interaction effects on human health, such as those induced by mixtures of environmental contaminants. The usual approach is to formulate an additive statistical model and check for departures using product terms between the variables of interest. In th...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120739/ https://www.ncbi.nlm.nih.gov/pubmed/24993424 http://dx.doi.org/10.1186/1476-069X-13-57 |
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author | Lampa, Erik Lind, Lars Lind, P Monica Bornefalk-Hermansson, Anna |
author_facet | Lampa, Erik Lind, Lars Lind, P Monica Bornefalk-Hermansson, Anna |
author_sort | Lampa, Erik |
collection | PubMed |
description | BACKGROUND: There is a need to evaluate complex interaction effects on human health, such as those induced by mixtures of environmental contaminants. The usual approach is to formulate an additive statistical model and check for departures using product terms between the variables of interest. In this paper, we present an approach to search for interaction effects among several variables using boosted regression trees. METHODS: We simulate a continuous outcome from real data on 27 environmental contaminants, some of which are correlated, and test the method’s ability to uncover the simulated interactions. The simulated outcome contains one four-way interaction, one non-linear effect and one interaction between a continuous variable and a binary variable. Four scenarios reflecting different strengths of association are simulated. We illustrate the method using real data. RESULTS: The method succeeded in identifying the true interactions in all scenarios except where the association was weakest. Some spurious interactions were also found, however. The method was also capable to identify interactions in the real data set. CONCLUSIONS: We conclude that boosted regression trees can be used to uncover complex interaction effects in epidemiological studies. |
format | Online Article Text |
id | pubmed-4120739 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-41207392014-08-06 The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees Lampa, Erik Lind, Lars Lind, P Monica Bornefalk-Hermansson, Anna Environ Health Research BACKGROUND: There is a need to evaluate complex interaction effects on human health, such as those induced by mixtures of environmental contaminants. The usual approach is to formulate an additive statistical model and check for departures using product terms between the variables of interest. In this paper, we present an approach to search for interaction effects among several variables using boosted regression trees. METHODS: We simulate a continuous outcome from real data on 27 environmental contaminants, some of which are correlated, and test the method’s ability to uncover the simulated interactions. The simulated outcome contains one four-way interaction, one non-linear effect and one interaction between a continuous variable and a binary variable. Four scenarios reflecting different strengths of association are simulated. We illustrate the method using real data. RESULTS: The method succeeded in identifying the true interactions in all scenarios except where the association was weakest. Some spurious interactions were also found, however. The method was also capable to identify interactions in the real data set. CONCLUSIONS: We conclude that boosted regression trees can be used to uncover complex interaction effects in epidemiological studies. BioMed Central 2014-07-04 /pmc/articles/PMC4120739/ /pubmed/24993424 http://dx.doi.org/10.1186/1476-069X-13-57 Text en Copyright © 2014 Lampa et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Lampa, Erik Lind, Lars Lind, P Monica Bornefalk-Hermansson, Anna The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees |
title | The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees |
title_full | The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees |
title_fullStr | The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees |
title_full_unstemmed | The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees |
title_short | The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees |
title_sort | identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120739/ https://www.ncbi.nlm.nih.gov/pubmed/24993424 http://dx.doi.org/10.1186/1476-069X-13-57 |
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