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High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population
β-thalassemia is a common inherited disorder worldwide including southern China, and at least 45 distinct β-thalassemia mutations have been identified in China. High-resolution melting (HRM) assay was recently introduced as a rapid, inexpensive and effective method for genotyping. However, there was...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121066/ https://www.ncbi.nlm.nih.gov/pubmed/25089872 http://dx.doi.org/10.1371/journal.pone.0102243 |
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author | Lin, Min Jiao, Ji-Wei Zhan, Xiu-Hui Zhan, Xiao-Fen Pan, Mei-Chen Wang, Jun-Li Wang, Chun-Fang Zhong, Tian-Yu Zhang, Qin Yu, Xia Wu, Jiao-Ren Yang, Hui-Tian Lin, Fen Tong, Xin Yang, Hui Zha, Guang-Cai Wang, Qian Zheng, Lei Wen, Ying-Fang Yang, Li-Ye |
author_facet | Lin, Min Jiao, Ji-Wei Zhan, Xiu-Hui Zhan, Xiao-Fen Pan, Mei-Chen Wang, Jun-Li Wang, Chun-Fang Zhong, Tian-Yu Zhang, Qin Yu, Xia Wu, Jiao-Ren Yang, Hui-Tian Lin, Fen Tong, Xin Yang, Hui Zha, Guang-Cai Wang, Qian Zheng, Lei Wen, Ying-Fang Yang, Li-Ye |
author_sort | Lin, Min |
collection | PubMed |
description | β-thalassemia is a common inherited disorder worldwide including southern China, and at least 45 distinct β-thalassemia mutations have been identified in China. High-resolution melting (HRM) assay was recently introduced as a rapid, inexpensive and effective method for genotyping. However, there was no systemic study on the diagnostic capability of HRM to identify β-thalassemia. Here, we used an improved HRM method to screen and type 12 common β-thalassemia mutations in Chinese, and the rapidity and reliability of this method was investigated. The whole PCR and HRM procedure could be completed in 40 min. The heterozygous mutations and 4 kinds of homozygous mutations could be readily differentiated from the melting curve except c.-78A>G heterozygote and c.-79A>G heterozygote. The diagnostic reliability of this HRM assay was evaluated on 756 pre-typed genomic DNA samples and 50 cases of blood spots on filter paper, which were collected from seven high prevalent provinces in southern China. If c.-78A>G heterozygote and c.-79A>G heterozygote were classified into the same group (c.-78&79 A>G heterozygote), the HRM method was in complete concordance with the reference method (reverse dot blot/DNA-sequencing). In a conclusion, the HRM method appears to be an accurate and sensitive method for the rapid screening and identification of β-thalassemia mutations. In the future, we suggest this technology to be used in neonatal blood spot screening program. It could enlarge the coverage of β-thalassemia screening program in China. At the same time, its value should be confirmed in prospectively clinical and epidemiological studies. |
format | Online Article Text |
id | pubmed-4121066 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41210662014-08-05 High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population Lin, Min Jiao, Ji-Wei Zhan, Xiu-Hui Zhan, Xiao-Fen Pan, Mei-Chen Wang, Jun-Li Wang, Chun-Fang Zhong, Tian-Yu Zhang, Qin Yu, Xia Wu, Jiao-Ren Yang, Hui-Tian Lin, Fen Tong, Xin Yang, Hui Zha, Guang-Cai Wang, Qian Zheng, Lei Wen, Ying-Fang Yang, Li-Ye PLoS One Research Article β-thalassemia is a common inherited disorder worldwide including southern China, and at least 45 distinct β-thalassemia mutations have been identified in China. High-resolution melting (HRM) assay was recently introduced as a rapid, inexpensive and effective method for genotyping. However, there was no systemic study on the diagnostic capability of HRM to identify β-thalassemia. Here, we used an improved HRM method to screen and type 12 common β-thalassemia mutations in Chinese, and the rapidity and reliability of this method was investigated. The whole PCR and HRM procedure could be completed in 40 min. The heterozygous mutations and 4 kinds of homozygous mutations could be readily differentiated from the melting curve except c.-78A>G heterozygote and c.-79A>G heterozygote. The diagnostic reliability of this HRM assay was evaluated on 756 pre-typed genomic DNA samples and 50 cases of blood spots on filter paper, which were collected from seven high prevalent provinces in southern China. If c.-78A>G heterozygote and c.-79A>G heterozygote were classified into the same group (c.-78&79 A>G heterozygote), the HRM method was in complete concordance with the reference method (reverse dot blot/DNA-sequencing). In a conclusion, the HRM method appears to be an accurate and sensitive method for the rapid screening and identification of β-thalassemia mutations. In the future, we suggest this technology to be used in neonatal blood spot screening program. It could enlarge the coverage of β-thalassemia screening program in China. At the same time, its value should be confirmed in prospectively clinical and epidemiological studies. Public Library of Science 2014-08-04 /pmc/articles/PMC4121066/ /pubmed/25089872 http://dx.doi.org/10.1371/journal.pone.0102243 Text en © 2014 Lin et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Lin, Min Jiao, Ji-Wei Zhan, Xiu-Hui Zhan, Xiao-Fen Pan, Mei-Chen Wang, Jun-Li Wang, Chun-Fang Zhong, Tian-Yu Zhang, Qin Yu, Xia Wu, Jiao-Ren Yang, Hui-Tian Lin, Fen Tong, Xin Yang, Hui Zha, Guang-Cai Wang, Qian Zheng, Lei Wen, Ying-Fang Yang, Li-Ye High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population |
title | High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population |
title_full | High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population |
title_fullStr | High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population |
title_full_unstemmed | High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population |
title_short | High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population |
title_sort | high resolution melting analysis: a rapid screening and typing tool for common β-thalassemia mutation in chinese population |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121066/ https://www.ncbi.nlm.nih.gov/pubmed/25089872 http://dx.doi.org/10.1371/journal.pone.0102243 |
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