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Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1)
• Premise of the study: We developed 10 novel microsatellite loci for Sagina nodosa, a diploid perennial arctic-alpine herb. To our knowledge, these are the first microsatellite loci for a Sagina species. • Methods and Results: We performed a low-coverage 454 next-generation sequencing of enriched g...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123380/ https://www.ncbi.nlm.nih.gov/pubmed/25202593 http://dx.doi.org/10.3732/apps.1300064 |
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author | Singh, Tarjinder Edwards, Joan Maroja, Luana S. |
author_facet | Singh, Tarjinder Edwards, Joan Maroja, Luana S. |
author_sort | Singh, Tarjinder |
collection | PubMed |
description | • Premise of the study: We developed 10 novel microsatellite loci for Sagina nodosa, a diploid perennial arctic-alpine herb. To our knowledge, these are the first microsatellite loci for a Sagina species. • Methods and Results: We performed a low-coverage 454 next-generation sequencing of enriched genomic fragments derived from one individual to generate a massive library of contigs containing potential polymorphic microsatellites. We present data for 10 novel polymorphic microsatellite loci containing di-, tri-, tetra-, and hexanucleotide repeats with two to nine alleles per locus assessed in 29 individuals. • Conclusions: These polymorphic microsatellite loci in S. nodosa will provide insights on the population structure and life history of S. nodosa in Isle Royale and other North American populations. |
format | Online Article Text |
id | pubmed-4123380 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41233802014-09-08 Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1) Singh, Tarjinder Edwards, Joan Maroja, Luana S. Appl Plant Sci Primer Note • Premise of the study: We developed 10 novel microsatellite loci for Sagina nodosa, a diploid perennial arctic-alpine herb. To our knowledge, these are the first microsatellite loci for a Sagina species. • Methods and Results: We performed a low-coverage 454 next-generation sequencing of enriched genomic fragments derived from one individual to generate a massive library of contigs containing potential polymorphic microsatellites. We present data for 10 novel polymorphic microsatellite loci containing di-, tri-, tetra-, and hexanucleotide repeats with two to nine alleles per locus assessed in 29 individuals. • Conclusions: These polymorphic microsatellite loci in S. nodosa will provide insights on the population structure and life history of S. nodosa in Isle Royale and other North American populations. Botanical Society of America 2014-01-07 /pmc/articles/PMC4123380/ /pubmed/25202593 http://dx.doi.org/10.3732/apps.1300064 Text en © 2014 Singh et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Singh, Tarjinder Edwards, Joan Maroja, Luana S. Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1) |
title | Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1) |
title_full | Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1) |
title_fullStr | Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1) |
title_full_unstemmed | Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1) |
title_short | Development and characterization of 10 microsatellite markers in Sagina nodosa (Caryophyllaceae)(1) |
title_sort | development and characterization of 10 microsatellite markers in sagina nodosa (caryophyllaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123380/ https://www.ncbi.nlm.nih.gov/pubmed/25202593 http://dx.doi.org/10.3732/apps.1300064 |
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