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Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1)
• Premise of the study: Protorhus deflexa is an endemic large-seeded tree in Madagascar that depends heavily on insects for cross-pollination and on large-bodied frugivores for seed dispersal. Because such mutualistic relationships are vulnerable to human disturbance, the development of microsatelli...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123381/ https://www.ncbi.nlm.nih.gov/pubmed/25202590 http://dx.doi.org/10.3732/apps.1300046 |
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author | Sato, Hiroki Adenyo, Christopher Harata, Tsuyoshi Nanami, Satoshi Itoh, Akira Takahata, Yukio Inoue-Murayama, Miho |
author_facet | Sato, Hiroki Adenyo, Christopher Harata, Tsuyoshi Nanami, Satoshi Itoh, Akira Takahata, Yukio Inoue-Murayama, Miho |
author_sort | Sato, Hiroki |
collection | PubMed |
description | • Premise of the study: Protorhus deflexa is an endemic large-seeded tree in Madagascar that depends heavily on insects for cross-pollination and on large-bodied frugivores for seed dispersal. Because such mutualistic relationships are vulnerable to human disturbance, the development of microsatellite markers will enhance analyses of gene flow in this tree species in degraded forests. • Methods and Results: Nineteen microsatellite markers were developed for P. deflexa using 454 pyrosequencing. The number of alleles ranged from two to nine, and the ranges of observed and expected heterozygosities were 0.200–0.800 and 0.303–0.821, respectively. The parentage exclusion probability by the 19 loci reached 0.98583 for the first parent and 0.99971 for the second parent. • Conclusions: These markers will be useful for studying gene flow via pollination and seed dispersal by animals and the genetic structure of P. deflexa in protected and degraded forests in Madagascar. |
format | Online Article Text |
id | pubmed-4123381 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41233812014-09-08 Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1) Sato, Hiroki Adenyo, Christopher Harata, Tsuyoshi Nanami, Satoshi Itoh, Akira Takahata, Yukio Inoue-Murayama, Miho Appl Plant Sci Primer Note • Premise of the study: Protorhus deflexa is an endemic large-seeded tree in Madagascar that depends heavily on insects for cross-pollination and on large-bodied frugivores for seed dispersal. Because such mutualistic relationships are vulnerable to human disturbance, the development of microsatellite markers will enhance analyses of gene flow in this tree species in degraded forests. • Methods and Results: Nineteen microsatellite markers were developed for P. deflexa using 454 pyrosequencing. The number of alleles ranged from two to nine, and the ranges of observed and expected heterozygosities were 0.200–0.800 and 0.303–0.821, respectively. The parentage exclusion probability by the 19 loci reached 0.98583 for the first parent and 0.99971 for the second parent. • Conclusions: These markers will be useful for studying gene flow via pollination and seed dispersal by animals and the genetic structure of P. deflexa in protected and degraded forests in Madagascar. Botanical Society of America 2013-11-28 /pmc/articles/PMC4123381/ /pubmed/25202590 http://dx.doi.org/10.3732/apps.1300046 Text en © 2014 Sato et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Sato, Hiroki Adenyo, Christopher Harata, Tsuyoshi Nanami, Satoshi Itoh, Akira Takahata, Yukio Inoue-Murayama, Miho Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1) |
title | Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1) |
title_full | Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1) |
title_fullStr | Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1) |
title_full_unstemmed | Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1) |
title_short | Isolation and characterization of microsatellite loci for the large-seeded tree Protorhus deflexa (Anacardiaceae)(1) |
title_sort | isolation and characterization of microsatellite loci for the large-seeded tree protorhus deflexa (anacardiaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123381/ https://www.ncbi.nlm.nih.gov/pubmed/25202590 http://dx.doi.org/10.3732/apps.1300046 |
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