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The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet

The planet is experiencing an ongoing global biodiversity crisis. Measuring the magnitude and rate of change more effectively requires access to organized, easily discoverable, and digitally-formatted biodiversity data, both legacy and new, from across the globe. Assembling this coherent digital rep...

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Detalles Bibliográficos
Autores principales: Robertson, Tim, Döring, Markus, Guralnick, Robert, Bloom, David, Wieczorek, John, Braak, Kyle, Otegui, Javier, Russell, Laura, Desmet, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123864/
https://www.ncbi.nlm.nih.gov/pubmed/25099149
http://dx.doi.org/10.1371/journal.pone.0102623
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author Robertson, Tim
Döring, Markus
Guralnick, Robert
Bloom, David
Wieczorek, John
Braak, Kyle
Otegui, Javier
Russell, Laura
Desmet, Peter
author_facet Robertson, Tim
Döring, Markus
Guralnick, Robert
Bloom, David
Wieczorek, John
Braak, Kyle
Otegui, Javier
Russell, Laura
Desmet, Peter
author_sort Robertson, Tim
collection PubMed
description The planet is experiencing an ongoing global biodiversity crisis. Measuring the magnitude and rate of change more effectively requires access to organized, easily discoverable, and digitally-formatted biodiversity data, both legacy and new, from across the globe. Assembling this coherent digital representation of biodiversity requires the integration of data that have historically been analog, dispersed, and heterogeneous. The Integrated Publishing Toolkit (IPT) is a software package developed to support biodiversity dataset publication in a common format. The IPT’s two primary functions are to 1) encode existing species occurrence datasets and checklists, such as records from natural history collections or observations, in the Darwin Core standard to enhance interoperability of data, and 2) publish and archive data and metadata for broad use in a Darwin Core Archive, a set of files following a standard format. Here we discuss the key need for the IPT, how it has developed in response to community input, and how it continues to evolve to streamline and enhance the interoperability, discoverability, and mobilization of new data types beyond basic Darwin Core records. We close with a discussion how IPT has impacted the biodiversity research community, how it enhances data publishing in more traditional journal venues, along with new features implemented in the latest version of the IPT, and future plans for more enhancements.
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spelling pubmed-41238642014-08-12 The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet Robertson, Tim Döring, Markus Guralnick, Robert Bloom, David Wieczorek, John Braak, Kyle Otegui, Javier Russell, Laura Desmet, Peter PLoS One Research Article The planet is experiencing an ongoing global biodiversity crisis. Measuring the magnitude and rate of change more effectively requires access to organized, easily discoverable, and digitally-formatted biodiversity data, both legacy and new, from across the globe. Assembling this coherent digital representation of biodiversity requires the integration of data that have historically been analog, dispersed, and heterogeneous. The Integrated Publishing Toolkit (IPT) is a software package developed to support biodiversity dataset publication in a common format. The IPT’s two primary functions are to 1) encode existing species occurrence datasets and checklists, such as records from natural history collections or observations, in the Darwin Core standard to enhance interoperability of data, and 2) publish and archive data and metadata for broad use in a Darwin Core Archive, a set of files following a standard format. Here we discuss the key need for the IPT, how it has developed in response to community input, and how it continues to evolve to streamline and enhance the interoperability, discoverability, and mobilization of new data types beyond basic Darwin Core records. We close with a discussion how IPT has impacted the biodiversity research community, how it enhances data publishing in more traditional journal venues, along with new features implemented in the latest version of the IPT, and future plans for more enhancements. Public Library of Science 2014-08-06 /pmc/articles/PMC4123864/ /pubmed/25099149 http://dx.doi.org/10.1371/journal.pone.0102623 Text en © 2014 Roberston et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Robertson, Tim
Döring, Markus
Guralnick, Robert
Bloom, David
Wieczorek, John
Braak, Kyle
Otegui, Javier
Russell, Laura
Desmet, Peter
The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
title The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
title_full The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
title_fullStr The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
title_full_unstemmed The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
title_short The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
title_sort gbif integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123864/
https://www.ncbi.nlm.nih.gov/pubmed/25099149
http://dx.doi.org/10.1371/journal.pone.0102623
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