GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

DNA sequences are translated into protein coding sequences and then further assigned to protein families in metagenomic analyses, because of the need for sensitivity. However, huge amounts of sequence data create the problem that even general homology search analyses using BLASTX become difficult in...

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Detalles Bibliográficos
Autores principales: Suzuki, Shuji, Kakuta, Masanori, Ishida, Takashi, Akiyama, Yutaka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123905/
https://www.ncbi.nlm.nih.gov/pubmed/25099887
http://dx.doi.org/10.1371/journal.pone.0103833

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123905/
https://www.ncbi.nlm.nih.gov/pubmed/25099887
http://dx.doi.org/10.1371/journal.pone.0103833

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