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Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.

Earlier phylogenetic analyses of the marine Rhodobacteraceae (class Alphaproteobacteria) genera Leisingera and Phaeobacter indicated that neither genus might be monophyletic. We here used phylogenetic reconstruction from genome-scale data, MALDI-TOF mass-spectrometry analysis and a re-assessment of...

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Autores principales: Breider, Sven, Scheuner, Carmen, Schumann, Peter, Fiebig, Anne, Petersen, Jörn, Pradella, Silke, Klenk, Hans-Peter, Brinkhoff, Thorsten, Göker, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4127530/
https://www.ncbi.nlm.nih.gov/pubmed/25157246
http://dx.doi.org/10.3389/fmicb.2014.00416
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author Breider, Sven
Scheuner, Carmen
Schumann, Peter
Fiebig, Anne
Petersen, Jörn
Pradella, Silke
Klenk, Hans-Peter
Brinkhoff, Thorsten
Göker, Markus
author_facet Breider, Sven
Scheuner, Carmen
Schumann, Peter
Fiebig, Anne
Petersen, Jörn
Pradella, Silke
Klenk, Hans-Peter
Brinkhoff, Thorsten
Göker, Markus
author_sort Breider, Sven
collection PubMed
description Earlier phylogenetic analyses of the marine Rhodobacteraceae (class Alphaproteobacteria) genera Leisingera and Phaeobacter indicated that neither genus might be monophyletic. We here used phylogenetic reconstruction from genome-scale data, MALDI-TOF mass-spectrometry analysis and a re-assessment of the phenotypic data from the literature to settle this matter, aiming at a reclassification of the two genera. Neither Phaeobacter nor Leisingera formed a clade in any of the phylogenetic analyses conducted. Rather, smaller monophyletic assemblages emerged, which were phenotypically more homogeneous, too. We thus propose the reclassification of Leisingera nanhaiensis as the type species of a new genus as Sedimentitalea nanhaiensis gen. nov., comb. nov., the reclassification of Phaeobacter arcticus and Phaeobacter leonis as Pseudophaeobacter arcticus gen. nov., comb. nov. and Pseudophaeobacter leonis comb. nov., and the reclassification of Phaeobacter aquaemixtae, Phaeobacter caeruleus, and Phaeobacter daeponensis as Leisingera aquaemixtae comb. nov., Leisingera caerulea comb. nov., and Leisingera daeponensis comb. nov. The genera Phaeobacter and Leisingera are accordingly emended.
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spelling pubmed-41275302014-08-25 Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov. Breider, Sven Scheuner, Carmen Schumann, Peter Fiebig, Anne Petersen, Jörn Pradella, Silke Klenk, Hans-Peter Brinkhoff, Thorsten Göker, Markus Front Microbiol Microbiology Earlier phylogenetic analyses of the marine Rhodobacteraceae (class Alphaproteobacteria) genera Leisingera and Phaeobacter indicated that neither genus might be monophyletic. We here used phylogenetic reconstruction from genome-scale data, MALDI-TOF mass-spectrometry analysis and a re-assessment of the phenotypic data from the literature to settle this matter, aiming at a reclassification of the two genera. Neither Phaeobacter nor Leisingera formed a clade in any of the phylogenetic analyses conducted. Rather, smaller monophyletic assemblages emerged, which were phenotypically more homogeneous, too. We thus propose the reclassification of Leisingera nanhaiensis as the type species of a new genus as Sedimentitalea nanhaiensis gen. nov., comb. nov., the reclassification of Phaeobacter arcticus and Phaeobacter leonis as Pseudophaeobacter arcticus gen. nov., comb. nov. and Pseudophaeobacter leonis comb. nov., and the reclassification of Phaeobacter aquaemixtae, Phaeobacter caeruleus, and Phaeobacter daeponensis as Leisingera aquaemixtae comb. nov., Leisingera caerulea comb. nov., and Leisingera daeponensis comb. nov. The genera Phaeobacter and Leisingera are accordingly emended. Frontiers Media S.A. 2014-08-11 /pmc/articles/PMC4127530/ /pubmed/25157246 http://dx.doi.org/10.3389/fmicb.2014.00416 Text en Copyright © 2014 Breider, Scheuner, Schumann, Fiebig, Petersen, Pradella, Klenk, Brinkhoff and Göker. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Breider, Sven
Scheuner, Carmen
Schumann, Peter
Fiebig, Anne
Petersen, Jörn
Pradella, Silke
Klenk, Hans-Peter
Brinkhoff, Thorsten
Göker, Markus
Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.
title Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.
title_full Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.
title_fullStr Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.
title_full_unstemmed Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.
title_short Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.
title_sort genome-scale data suggest reclassifications in the leisingera-phaeobacter cluster including proposals for sedimentitalea gen. nov. and pseudophaeobacter gen. nov.
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4127530/
https://www.ncbi.nlm.nih.gov/pubmed/25157246
http://dx.doi.org/10.3389/fmicb.2014.00416
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