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Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST
Material and Methods. We recall the definition of epistasis and extend it for metagenomic biomarkers and then we describe the overview of our method metaBOOST and provide detailed information about each step of metaBOOST. Results. We describe the data sources for both simulation studies and real met...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131565/ https://www.ncbi.nlm.nih.gov/pubmed/25165702 http://dx.doi.org/10.1155/2014/398147 |
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author | Wu, Mengmeng Jiang, Rui |
author_facet | Wu, Mengmeng Jiang, Rui |
author_sort | Wu, Mengmeng |
collection | PubMed |
description | Material and Methods. We recall the definition of epistasis and extend it for metagenomic biomarkers and then we describe the overview of our method metaBOOST and provide detailed information about each step of metaBOOST. Results. We describe the data sources for both simulation studies and real metagenomic datasets. Then, we describe the procedure of simulation studies and provide results for it. After that, we conduct real datasets studies and report the results. Conclusions and Discussion. Finally, we conclude our method and discuss some possible improvements for the future. |
format | Online Article Text |
id | pubmed-4131565 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-41315652014-08-27 Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST Wu, Mengmeng Jiang, Rui Biomed Res Int Research Article Material and Methods. We recall the definition of epistasis and extend it for metagenomic biomarkers and then we describe the overview of our method metaBOOST and provide detailed information about each step of metaBOOST. Results. We describe the data sources for both simulation studies and real metagenomic datasets. Then, we describe the procedure of simulation studies and provide results for it. After that, we conduct real datasets studies and report the results. Conclusions and Discussion. Finally, we conclude our method and discuss some possible improvements for the future. Hindawi Publishing Corporation 2014 2014-07-24 /pmc/articles/PMC4131565/ /pubmed/25165702 http://dx.doi.org/10.1155/2014/398147 Text en Copyright © 2014 M. Wu and R. Jiang. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Wu, Mengmeng Jiang, Rui Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST |
title | Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST |
title_full | Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST |
title_fullStr | Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST |
title_full_unstemmed | Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST |
title_short | Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST |
title_sort | detecting epistatic interactions in metagenome-wide association studies by metaboost |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131565/ https://www.ncbi.nlm.nih.gov/pubmed/25165702 http://dx.doi.org/10.1155/2014/398147 |
work_keys_str_mv | AT wumengmeng detectingepistaticinteractionsinmetagenomewideassociationstudiesbymetaboost AT jiangrui detectingepistaticinteractionsinmetagenomewideassociationstudiesbymetaboost |