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Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST

Material and Methods. We recall the definition of epistasis and extend it for metagenomic biomarkers and then we describe the overview of our method metaBOOST and provide detailed information about each step of metaBOOST. Results. We describe the data sources for both simulation studies and real met...

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Autores principales: Wu, Mengmeng, Jiang, Rui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131565/
https://www.ncbi.nlm.nih.gov/pubmed/25165702
http://dx.doi.org/10.1155/2014/398147
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author Wu, Mengmeng
Jiang, Rui
author_facet Wu, Mengmeng
Jiang, Rui
author_sort Wu, Mengmeng
collection PubMed
description Material and Methods. We recall the definition of epistasis and extend it for metagenomic biomarkers and then we describe the overview of our method metaBOOST and provide detailed information about each step of metaBOOST. Results. We describe the data sources for both simulation studies and real metagenomic datasets. Then, we describe the procedure of simulation studies and provide results for it. After that, we conduct real datasets studies and report the results. Conclusions and Discussion. Finally, we conclude our method and discuss some possible improvements for the future.
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spelling pubmed-41315652014-08-27 Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST Wu, Mengmeng Jiang, Rui Biomed Res Int Research Article Material and Methods. We recall the definition of epistasis and extend it for metagenomic biomarkers and then we describe the overview of our method metaBOOST and provide detailed information about each step of metaBOOST. Results. We describe the data sources for both simulation studies and real metagenomic datasets. Then, we describe the procedure of simulation studies and provide results for it. After that, we conduct real datasets studies and report the results. Conclusions and Discussion. Finally, we conclude our method and discuss some possible improvements for the future. Hindawi Publishing Corporation 2014 2014-07-24 /pmc/articles/PMC4131565/ /pubmed/25165702 http://dx.doi.org/10.1155/2014/398147 Text en Copyright © 2014 M. Wu and R. Jiang. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wu, Mengmeng
Jiang, Rui
Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST
title Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST
title_full Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST
title_fullStr Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST
title_full_unstemmed Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST
title_short Detecting Epistatic Interactions in Metagenome-Wide Association Studies by metaBOOST
title_sort detecting epistatic interactions in metagenome-wide association studies by metaboost
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131565/
https://www.ncbi.nlm.nih.gov/pubmed/25165702
http://dx.doi.org/10.1155/2014/398147
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