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Objective comparison of particle tracking methods

Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tas...

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Autores principales: Chenouard, Nicolas, Smal, Ihor, de Chaumont, Fabrice, Maška, Martin, Sbalzarini, Ivo F, Gong, Yuanhao, Cardinale, Janick, Carthel, Craig, Coraluppi, Stefano, Winter, Mark, Cohen, Andrew R, Godinez, William J, Rohr, Karl, Kalaidzidis, Yannis, Liang, Liang, Duncan, James, Shen, Hongying, Xu, Yingke, Magnusson, Klas E G, Jaldén, Joakim, Blau, Helen M, Paul-Gilloteaux, Perrine, Roudot, Philippe, Kervrann, Charles, Waharte, François, Tinevez, Jean-Yves, Shorte, Spencer L, Willemse, Joost, Celler, Katherine, van Wezel, Gilles P, Dan, Han-Wei, Tsai, Yuh-Show, de Solórzano, Carlos Ortiz, Olivo-Marin, Jean-Christophe, Meijering, Erik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131736/
https://www.ncbi.nlm.nih.gov/pubmed/24441936
http://dx.doi.org/10.1038/nmeth.2808
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author Chenouard, Nicolas
Smal, Ihor
de Chaumont, Fabrice
Maška, Martin
Sbalzarini, Ivo F
Gong, Yuanhao
Cardinale, Janick
Carthel, Craig
Coraluppi, Stefano
Winter, Mark
Cohen, Andrew R
Godinez, William J
Rohr, Karl
Kalaidzidis, Yannis
Liang, Liang
Duncan, James
Shen, Hongying
Xu, Yingke
Magnusson, Klas E G
Jaldén, Joakim
Blau, Helen M
Paul-Gilloteaux, Perrine
Roudot, Philippe
Kervrann, Charles
Waharte, François
Tinevez, Jean-Yves
Shorte, Spencer L
Willemse, Joost
Celler, Katherine
van Wezel, Gilles P
Dan, Han-Wei
Tsai, Yuh-Show
de Solórzano, Carlos Ortiz
Olivo-Marin, Jean-Christophe
Meijering, Erik
author_facet Chenouard, Nicolas
Smal, Ihor
de Chaumont, Fabrice
Maška, Martin
Sbalzarini, Ivo F
Gong, Yuanhao
Cardinale, Janick
Carthel, Craig
Coraluppi, Stefano
Winter, Mark
Cohen, Andrew R
Godinez, William J
Rohr, Karl
Kalaidzidis, Yannis
Liang, Liang
Duncan, James
Shen, Hongying
Xu, Yingke
Magnusson, Klas E G
Jaldén, Joakim
Blau, Helen M
Paul-Gilloteaux, Perrine
Roudot, Philippe
Kervrann, Charles
Waharte, François
Tinevez, Jean-Yves
Shorte, Spencer L
Willemse, Joost
Celler, Katherine
van Wezel, Gilles P
Dan, Han-Wei
Tsai, Yuh-Show
de Solórzano, Carlos Ortiz
Olivo-Marin, Jean-Christophe
Meijering, Erik
author_sort Chenouard, Nicolas
collection PubMed
description Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nmeth.2808) contains supplementary material, which is available to authorized users.
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spelling pubmed-41317362014-09-01 Objective comparison of particle tracking methods Chenouard, Nicolas Smal, Ihor de Chaumont, Fabrice Maška, Martin Sbalzarini, Ivo F Gong, Yuanhao Cardinale, Janick Carthel, Craig Coraluppi, Stefano Winter, Mark Cohen, Andrew R Godinez, William J Rohr, Karl Kalaidzidis, Yannis Liang, Liang Duncan, James Shen, Hongying Xu, Yingke Magnusson, Klas E G Jaldén, Joakim Blau, Helen M Paul-Gilloteaux, Perrine Roudot, Philippe Kervrann, Charles Waharte, François Tinevez, Jean-Yves Shorte, Spencer L Willemse, Joost Celler, Katherine van Wezel, Gilles P Dan, Han-Wei Tsai, Yuh-Show de Solórzano, Carlos Ortiz Olivo-Marin, Jean-Christophe Meijering, Erik Nat Methods Article Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nmeth.2808) contains supplementary material, which is available to authorized users. Nature Publishing Group US 2014-01-19 2014 /pmc/articles/PMC4131736/ /pubmed/24441936 http://dx.doi.org/10.1038/nmeth.2808 Text en © The Author(s) 2013 This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/
spellingShingle Article
Chenouard, Nicolas
Smal, Ihor
de Chaumont, Fabrice
Maška, Martin
Sbalzarini, Ivo F
Gong, Yuanhao
Cardinale, Janick
Carthel, Craig
Coraluppi, Stefano
Winter, Mark
Cohen, Andrew R
Godinez, William J
Rohr, Karl
Kalaidzidis, Yannis
Liang, Liang
Duncan, James
Shen, Hongying
Xu, Yingke
Magnusson, Klas E G
Jaldén, Joakim
Blau, Helen M
Paul-Gilloteaux, Perrine
Roudot, Philippe
Kervrann, Charles
Waharte, François
Tinevez, Jean-Yves
Shorte, Spencer L
Willemse, Joost
Celler, Katherine
van Wezel, Gilles P
Dan, Han-Wei
Tsai, Yuh-Show
de Solórzano, Carlos Ortiz
Olivo-Marin, Jean-Christophe
Meijering, Erik
Objective comparison of particle tracking methods
title Objective comparison of particle tracking methods
title_full Objective comparison of particle tracking methods
title_fullStr Objective comparison of particle tracking methods
title_full_unstemmed Objective comparison of particle tracking methods
title_short Objective comparison of particle tracking methods
title_sort objective comparison of particle tracking methods
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131736/
https://www.ncbi.nlm.nih.gov/pubmed/24441936
http://dx.doi.org/10.1038/nmeth.2808
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