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Objective comparison of particle tracking methods
Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tas...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group US
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131736/ https://www.ncbi.nlm.nih.gov/pubmed/24441936 http://dx.doi.org/10.1038/nmeth.2808 |
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author | Chenouard, Nicolas Smal, Ihor de Chaumont, Fabrice Maška, Martin Sbalzarini, Ivo F Gong, Yuanhao Cardinale, Janick Carthel, Craig Coraluppi, Stefano Winter, Mark Cohen, Andrew R Godinez, William J Rohr, Karl Kalaidzidis, Yannis Liang, Liang Duncan, James Shen, Hongying Xu, Yingke Magnusson, Klas E G Jaldén, Joakim Blau, Helen M Paul-Gilloteaux, Perrine Roudot, Philippe Kervrann, Charles Waharte, François Tinevez, Jean-Yves Shorte, Spencer L Willemse, Joost Celler, Katherine van Wezel, Gilles P Dan, Han-Wei Tsai, Yuh-Show de Solórzano, Carlos Ortiz Olivo-Marin, Jean-Christophe Meijering, Erik |
author_facet | Chenouard, Nicolas Smal, Ihor de Chaumont, Fabrice Maška, Martin Sbalzarini, Ivo F Gong, Yuanhao Cardinale, Janick Carthel, Craig Coraluppi, Stefano Winter, Mark Cohen, Andrew R Godinez, William J Rohr, Karl Kalaidzidis, Yannis Liang, Liang Duncan, James Shen, Hongying Xu, Yingke Magnusson, Klas E G Jaldén, Joakim Blau, Helen M Paul-Gilloteaux, Perrine Roudot, Philippe Kervrann, Charles Waharte, François Tinevez, Jean-Yves Shorte, Spencer L Willemse, Joost Celler, Katherine van Wezel, Gilles P Dan, Han-Wei Tsai, Yuh-Show de Solórzano, Carlos Ortiz Olivo-Marin, Jean-Christophe Meijering, Erik |
author_sort | Chenouard, Nicolas |
collection | PubMed |
description | Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nmeth.2808) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4131736 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group US |
record_format | MEDLINE/PubMed |
spelling | pubmed-41317362014-09-01 Objective comparison of particle tracking methods Chenouard, Nicolas Smal, Ihor de Chaumont, Fabrice Maška, Martin Sbalzarini, Ivo F Gong, Yuanhao Cardinale, Janick Carthel, Craig Coraluppi, Stefano Winter, Mark Cohen, Andrew R Godinez, William J Rohr, Karl Kalaidzidis, Yannis Liang, Liang Duncan, James Shen, Hongying Xu, Yingke Magnusson, Klas E G Jaldén, Joakim Blau, Helen M Paul-Gilloteaux, Perrine Roudot, Philippe Kervrann, Charles Waharte, François Tinevez, Jean-Yves Shorte, Spencer L Willemse, Joost Celler, Katherine van Wezel, Gilles P Dan, Han-Wei Tsai, Yuh-Show de Solórzano, Carlos Ortiz Olivo-Marin, Jean-Christophe Meijering, Erik Nat Methods Article Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nmeth.2808) contains supplementary material, which is available to authorized users. Nature Publishing Group US 2014-01-19 2014 /pmc/articles/PMC4131736/ /pubmed/24441936 http://dx.doi.org/10.1038/nmeth.2808 Text en © The Author(s) 2013 This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ |
spellingShingle | Article Chenouard, Nicolas Smal, Ihor de Chaumont, Fabrice Maška, Martin Sbalzarini, Ivo F Gong, Yuanhao Cardinale, Janick Carthel, Craig Coraluppi, Stefano Winter, Mark Cohen, Andrew R Godinez, William J Rohr, Karl Kalaidzidis, Yannis Liang, Liang Duncan, James Shen, Hongying Xu, Yingke Magnusson, Klas E G Jaldén, Joakim Blau, Helen M Paul-Gilloteaux, Perrine Roudot, Philippe Kervrann, Charles Waharte, François Tinevez, Jean-Yves Shorte, Spencer L Willemse, Joost Celler, Katherine van Wezel, Gilles P Dan, Han-Wei Tsai, Yuh-Show de Solórzano, Carlos Ortiz Olivo-Marin, Jean-Christophe Meijering, Erik Objective comparison of particle tracking methods |
title | Objective comparison of particle tracking methods |
title_full | Objective comparison of particle tracking methods |
title_fullStr | Objective comparison of particle tracking methods |
title_full_unstemmed | Objective comparison of particle tracking methods |
title_short | Objective comparison of particle tracking methods |
title_sort | objective comparison of particle tracking methods |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131736/ https://www.ncbi.nlm.nih.gov/pubmed/24441936 http://dx.doi.org/10.1038/nmeth.2808 |
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