Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass

The benefits of using transgenic switchgrass with decreased levels of caffeic acid 3-O-methyltransferase (COMT) as biomass feedstock have been clearly demonstrated. However, its effect on the soil microbial community has not been assessed. Here we report metagenomic and metatranscriptomic analyses o...

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Autores principales: Chauhan, Archana, Smartt, Abby, Wang, Jun, Utturkar, Sagar, Frank, Ashley, Bi, Meng, Liu, Jiang, Williams, Daniel, Xu, Tingting, Eldridge, Melanie, Arreaza, Andres, Rogers, Alexandra, Gonzalez, Hector Castro, Layton, Alice C., Baxter, Holly L., Mazarei, Mitra, DeBruyn, Jennifer M., Stewart, C. Neal, Brown, Steven D., Hauser, Loren J., Sayler, Gary S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2014
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132618/
https://www.ncbi.nlm.nih.gov/pubmed/25125642
http://dx.doi.org/10.1128/genomeA.00777-14
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author Chauhan, Archana
Smartt, Abby
Wang, Jun
Utturkar, Sagar
Frank, Ashley
Bi, Meng
Liu, Jiang
Williams, Daniel
Xu, Tingting
Eldridge, Melanie
Arreaza, Andres
Rogers, Alexandra
Gonzalez, Hector Castro
Layton, Alice C.
Baxter, Holly L.
Mazarei, Mitra
DeBruyn, Jennifer M.
Stewart, C. Neal
Brown, Steven D.
Hauser, Loren J.
Sayler, Gary S.
author_facet Chauhan, Archana
Smartt, Abby
Wang, Jun
Utturkar, Sagar
Frank, Ashley
Bi, Meng
Liu, Jiang
Williams, Daniel
Xu, Tingting
Eldridge, Melanie
Arreaza, Andres
Rogers, Alexandra
Gonzalez, Hector Castro
Layton, Alice C.
Baxter, Holly L.
Mazarei, Mitra
DeBruyn, Jennifer M.
Stewart, C. Neal
Brown, Steven D.
Hauser, Loren J.
Sayler, Gary S.
author_sort Chauhan, Archana
collection PubMed
description The benefits of using transgenic switchgrass with decreased levels of caffeic acid 3-O-methyltransferase (COMT) as biomass feedstock have been clearly demonstrated. However, its effect on the soil microbial community has not been assessed. Here we report metagenomic and metatranscriptomic analyses of root-associated soil from COMT switchgrass compared with nontransgenic counterparts.
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spelling pubmed-41326182014-08-15 Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass Chauhan, Archana Smartt, Abby Wang, Jun Utturkar, Sagar Frank, Ashley Bi, Meng Liu, Jiang Williams, Daniel Xu, Tingting Eldridge, Melanie Arreaza, Andres Rogers, Alexandra Gonzalez, Hector Castro Layton, Alice C. Baxter, Holly L. Mazarei, Mitra DeBruyn, Jennifer M. Stewart, C. Neal Brown, Steven D. Hauser, Loren J. Sayler, Gary S. Genome Announc Prokaryotes The benefits of using transgenic switchgrass with decreased levels of caffeic acid 3-O-methyltransferase (COMT) as biomass feedstock have been clearly demonstrated. However, its effect on the soil microbial community has not been assessed. Here we report metagenomic and metatranscriptomic analyses of root-associated soil from COMT switchgrass compared with nontransgenic counterparts. American Society for Microbiology 2014-08-14 /pmc/articles/PMC4132618/ /pubmed/25125642 http://dx.doi.org/10.1128/genomeA.00777-14 Text en Copyright © 2014 Chauhan et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/) .
spellingShingle Prokaryotes
Chauhan, Archana
Smartt, Abby
Wang, Jun
Utturkar, Sagar
Frank, Ashley
Bi, Meng
Liu, Jiang
Williams, Daniel
Xu, Tingting
Eldridge, Melanie
Arreaza, Andres
Rogers, Alexandra
Gonzalez, Hector Castro
Layton, Alice C.
Baxter, Holly L.
Mazarei, Mitra
DeBruyn, Jennifer M.
Stewart, C. Neal
Brown, Steven D.
Hauser, Loren J.
Sayler, Gary S.
Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass
title Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass
title_full Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass
title_fullStr Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass
title_full_unstemmed Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass
title_short Integrated Metagenomics and Metatranscriptomics Analyses of Root-Associated Soil from Transgenic Switchgrass
title_sort integrated metagenomics and metatranscriptomics analyses of root-associated soil from transgenic switchgrass
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132618/
https://www.ncbi.nlm.nih.gov/pubmed/25125642
http://dx.doi.org/10.1128/genomeA.00777-14
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