A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933

Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly food-borne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we here present an updated high-quality, unambiguous...

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Autores principales: Latif, Haythem, Li, Howard J., Charusanti, Pep, Palsson, Bernhard Ø., Aziz, Ramy K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2014
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132626/
https://www.ncbi.nlm.nih.gov/pubmed/25125650
http://dx.doi.org/10.1128/genomeA.00821-14
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author Latif, Haythem
Li, Howard J.
Charusanti, Pep
Palsson, Bernhard Ø.
Aziz, Ramy K.
author_facet Latif, Haythem
Li, Howard J.
Charusanti, Pep
Palsson, Bernhard Ø.
Aziz, Ramy K.
author_sort Latif, Haythem
collection PubMed
description Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly food-borne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we here present an updated high-quality, unambiguous genome sequence with no assembly gaps.
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spelling pubmed-41326262014-08-15 A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933 Latif, Haythem Li, Howard J. Charusanti, Pep Palsson, Bernhard Ø. Aziz, Ramy K. Genome Announc Prokaryotes Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly food-borne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we here present an updated high-quality, unambiguous genome sequence with no assembly gaps. American Society for Microbiology 2014-08-14 /pmc/articles/PMC4132626/ /pubmed/25125650 http://dx.doi.org/10.1128/genomeA.00821-14 Text en Copyright © 2014 Latif et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/) .
spellingShingle Prokaryotes
Latif, Haythem
Li, Howard J.
Charusanti, Pep
Palsson, Bernhard Ø.
Aziz, Ramy K.
A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933
title A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933
title_full A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933
title_fullStr A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933
title_full_unstemmed A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933
title_short A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933
title_sort gapless, unambiguous genome sequence of the enterohemorrhagic escherichia coli o157:h7 strain edl933
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132626/
https://www.ncbi.nlm.nih.gov/pubmed/25125650
http://dx.doi.org/10.1128/genomeA.00821-14
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